Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPP40 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10799 ribonuclease P/MRP 40kDa subunit chr6 - 5003771 - 5009271 5004271 Transcription Factor Binding Sites   Download all TFBS in the RPP40 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 4999975 4999992 5.0E-06 AATTCAAACATTTAAATT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 4999975 4999992 7.0E-06 AATTTAAATGTTTGAATT 18 POU3F3_POU_DBD_monomeric_12_1 SELEX + 5000047 5000058 8.0E-06 TTTCATAATTTT 12 SOX9_HMG_full_dimeric_17_3 SELEX - 5000037 5000053 8.0E-06 TATGAAATTTAGTAAGT 17 HNF1B_MA0153.1 JASPAR - 5004787 5004798 9.0E-06 CCAATGGGTAAC 12 Pax4_MA0068.1 JASPAR + 5000127 5000156 5.0E-06 AAATTAATTTCCCTATAAATCAAATAATAA 30 ZNF524_C2H2_full_dimeric_12_1 SELEX + 5004564 5004575 7.0E-06 CCCCTTGGACCC 12 PAX3_PAX_DBD_dimeric_10_1 SELEX + 5000127 5000136 8.0E-06 AAATTAATTT 10 PAX3_PAX_DBD_dimeric_10_1 SELEX - 5000127 5000136 8.0E-06 AAATTAATTT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 5008003 5008012 6.0E-06 AGCAGCTGCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 5004656 5004669 8.0E-06 ATGGAAAGGCCCAG 14 SP4_C2H2_full_monomeric_17_1 SELEX + 5004279 5004295 5.0E-06 CACGCCCCGCCCCTTCC 17 Pou5f1_MA0142.1 JASPAR + 4999983 4999997 8.0E-06 CATTTAAATTTAAAT 15 FOXC1_MA0032.1 JASPAR - 5000036 5000043 7.0E-06 AGTAAGTA 8 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 5000131 5000144 8.0E-06 TTATAGGGAAATTA 14 V_HOXA9_01_M01351 TRANSFAC - 5000124 5000140 8.0E-06 AGGGAAATTAATTTTGT 17 V_MEQ_01_M02049 TRANSFAC + 5000025 5000033 2.0E-06 AACACACAT 9 V_HNF3B_01_M00131 TRANSFAC - 4999975 4999989 4.0E-06 TTAAATGTTTGAATT 15 V_MEIS1_02_M01419 TRANSFAC - 4999919 4999934 5.0E-06 AAAAATCTGTCAAACT 16 V_TST1_02_M01316 TRANSFAC - 5000123 5000139 7.0E-06 GGGAAATTAATTTTGTC 17 V_PREP1_01_M01459 TRANSFAC - 4999919 4999934 5.0E-06 AAAAATCTGTCAAACT 16 V_ZFP410_04_M02936 TRANSFAC + 5004280 5004296 9.0E-06 ACGCCCCGCCCCTTCCT 17 V_CEBP_Q3_M00770 TRANSFAC - 5000046 5000057 7.0E-06 AAATTATGAAAT 12 V_EVI1_04_M00081 TRANSFAC - 5000047 5000061 9.0E-06 AGAAAAATTATGAAA 15 V_AML3_Q6_M01856 TRANSFAC - 5004160 5004167 1.0E-05 AACCACAA 8 V_POU5F1_02_M02245 TRANSFAC + 4999983 4999997 8.0E-06 CATTTAAATTTAAAT 15 V_MAFB_03_M02879 TRANSFAC + 5000044 5000058 6.0E-06 AAATTTCATAATTTT 15 V_SP1_Q6_01_M00931 TRANSFAC - 5003995 5004004 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 5004022 5004031 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 5004282 5004291 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 5004300 5004309 4.0E-06 GGGGCGGGGC 10 V_GATA1_03_M00127 TRANSFAC + 5000004 5000017 6.0E-06 AAGAAGATTAGAAA 14 V_CEBP_Q2_M00190 TRANSFAC + 5000044 5000057 4.0E-06 AAATTTCATAATTT 14 V_AREB6_04_M00415 TRANSFAC - 5000012 5000020 8.0E-06 CTGTTTCTA 9 V_HELIOSA_01_M01003 TRANSFAC - 5000133 5000143 3.0E-06 TATAGGGAAAT 11 V_CEBPB_01_M00109 TRANSFAC - 5000044 5000057 0.0E+00 AAATTATGAAATTT 14 V_TGIF2_01_M01407 TRANSFAC - 4999919 4999934 2.0E-06 AAAAATCTGTCAAACT 16 V_ELF4_04_M02850 TRANSFAC - 4999925 4999941 0.0E+00 TTTTAAAAAAAATCTGT 17 V_ELF4_04_M02850 TRANSFAC - 4999927 4999943 5.0E-06 CCTTTTAAAAAAAATCT 17 V_TAL1_Q6_M00993 TRANSFAC - 5000016 5000025 3.0E-06 TCCATCTGTT 10 V_GC_01_M00255 TRANSFAC - 5004280 5004293 1.0E-06 AAGGGGCGGGGCGT 14 V_GC_01_M00255 TRANSFAC - 5004298 5004311 1.0E-06 AAGGGGCGGGGCGG 14 V_SOX7_03_M02807 TRANSFAC + 4999950 4999971 4.0E-06 TTTTTTGAACAAAGAGATTAGA 22 V_CRX_Q4_M00623 TRANSFAC - 5000005 5000017 7.0E-06 TTTCTAATCTTCT 13 V_HELIOSA_02_M01004 TRANSFAC + 5004640 5004650 2.0E-06 AAAAGGAAAAC 11 V_TCF3_04_M02816 TRANSFAC + 4999952 4999968 4.0E-06 TTTTGAACAAAGAGATT 17 V_MEIS2_01_M01488 TRANSFAC - 4999919 4999934 9.0E-06 AAAAATCTGTCAAACT 16 V_TGIF_02_M01346 TRANSFAC + 4999918 4999934 5.0E-06 AAGTTTGACAGATTTTT 17 V_DBX2_01_M01360 TRANSFAC - 5000123 5000138 3.0E-06 GGAAATTAATTTTGTC 16 V_CEBPE_Q6_M01868 TRANSFAC + 5000042 5000055 1.0E-06 CTAAATTTCATAAT 14 V_NFAT_Q6_M00302 TRANSFAC + 5004640 5004651 1.0E-05 AAAAGGAAAACA 12 V_HES1_Q2_M01009 TRANSFAC + 5006620 5006634 2.0E-06 AAGTCTTGTGGCCCT 15 V_AML2_01_M01759 TRANSFAC - 5004160 5004167 1.0E-05 AACCACAA 8 V_CEBPD_Q6_M00621 TRANSFAC + 5000045 5000056 0.0E+00 AATTTCATAATT 12 V_AMEF2_Q6_M00403 TRANSFAC + 5000038 5000055 7.0E-06 CTTACTAAATTTCATAAT 18 V_SP1_Q6_M00196 TRANSFAC - 5003994 5004006 1.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 5004021 5004033 4.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 5004281 5004293 1.0E-06 AAGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 5004299 5004311 1.0E-06 AAGGGGCGGGGCG 13 V_HNF1B_04_M02266 TRANSFAC - 5004787 5004798 9.0E-06 CCAATGGGTAAC 12 V_CDX2_Q5_M00729 TRANSFAC + 4999988 5000001 3.0E-06 AAATTTAAATTGCC 14 V_SOX_Q6_M01014 TRANSFAC - 4999953 4999965 1.0E-06 CTCTTTGTTCAAA 13 V_ASCL2_03_M02737 TRANSFAC + 5008000 5008016 6.0E-06 CTAGGCAGCTGCTACAA 17 V_PIT1_01_M01465 TRANSFAC - 5000123 5000139 2.0E-06 GGGAAATTAATTTTGTC 17 V_GR_Q6_M00192 TRANSFAC - 4999953 4999971 1.0E-05 TCTAATCTCTTTGTTCAAA 19 V_TCF7_03_M02817 TRANSFAC - 4999947 4999963 9.0E-06 CTTTGTTCAAAAAAATG 17 V_TCF7_03_M02817 TRANSFAC + 4999952 4999968 4.0E-06 TTTTGAACAAAGAGATT 17 V_HB24_01_M01399 TRANSFAC + 5000124 5000138 1.0E-05 ACAAAATTAATTTCC 15 V_POU6F1_01_M00465 TRANSFAC + 5000124 5000134 7.0E-06 ACAAAATTAAT 11 V_TBP_06_M02814 TRANSFAC - 4999985 5000000 9.0E-06 GCAATTTAAATTTAAA 16 V_TGIF1_01_M03111 TRANSFAC + 4999918 4999934 5.0E-06 AAGTTTGACAGATTTTT 17 V_LHX3b_01_M01971 TRANSFAC - 5000126 5000135 1.0E-06 AATTAATTTT 10 V_SOX11_03_M02795 TRANSFAC + 4999952 4999968 1.0E-06 TTTTGAACAAAGAGATT 17 V_BLIMP1_Q6_M01066 TRANSFAC - 5004443 5004458 4.0E-06 GGGACAGTGAATTTAC 16 V_SP4_Q5_M01273 TRANSFAC + 5003995 5004005 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 5004022 5004032 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 5004282 5004292 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 5004300 5004310 8.0E-06 GCCCCGCCCCT 11 V_OTX2_Q3_M01719 TRANSFAC + 4999960 4999972 1.0E-06 AAAGAGATTAGAG 13 V_MTF1_06_M02882 TRANSFAC - 4999928 4999941 7.0E-06 TTTTAAAAAAAATC 14 V_MTF1_06_M02882 TRANSFAC - 5000043 5000056 8.0E-06 AATTATGAAATTTA 14 V_MRG2_01_M01395 TRANSFAC - 4999919 4999934 4.0E-06 AAAAATCTGTCAAACT 16 V_BRN4_01_M01473 TRANSFAC - 5000123 5000139 3.0E-06 GGGAAATTAATTTTGTC 17 V_GFI1B_01_M01058 TRANSFAC - 5003724 5003735 9.0E-06 CAAATCAGGGCG 12 V_NKX61_02_M01469 TRANSFAC - 5000123 5000138 4.0E-06 GGAAATTAATTTTGTC 16 V_CEBPB_Q6_M01896 TRANSFAC - 5000045 5000054 7.0E-06 TTATGAAATT 10 V_OCT1_07_M00248 TRANSFAC + 4999981 4999992 9.0E-06 AACATTTAAATT 12 V_OCT1_07_M00248 TRANSFAC + 4999987 4999998 7.0E-06 TAAATTTAAATT 12 V_SRF_06_M02916 TRANSFAC - 4999925 4999941 1.0E-06 TTTTAAAAAAAATCTGT 17 V_SRF_06_M02916 TRANSFAC - 4999926 4999942 3.0E-06 CTTTTAAAAAAAATCTG 17 V_SRF_06_M02916 TRANSFAC - 4999927 4999943 7.0E-06 CCTTTTAAAAAAAATCT 17 V_PUR1_Q4_M01721 TRANSFAC - 5004450 5004458 6.0E-06 GGGACAGTG 9 V_SOX18_04_M02905 TRANSFAC + 5000039 5000054 5.0E-06 TTACTAAATTTCATAA 16 V_SOX12_03_M02796 TRANSFAC - 4999951 4999964 7.0E-06 TCTTTGTTCAAAAA 14 V_PIT1_Q6_M00802 TRANSFAC + 5000099 5000116 5.0E-06 TCTTCATAAGTGTCTTTA 18 V_MEF2_01_M00006 TRANSFAC - 4999927 4999942 9.0E-06 CTTTTAAAAAAAATCT 16 V_SP1_Q2_01_M00933 TRANSFAC + 5003996 5004005 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 5004283 5004292 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 5004301 5004310 7.0E-06 CCCCGCCCCT 10 V_CEBP_Q2_01_M00912 TRANSFAC + 5000046 5000057 0.0E+00 ATTTCATAATTT 12 V_SP1_Q4_01_M00932 TRANSFAC - 5003994 5004006 2.0E-06 GAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 5004021 5004033 6.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 5004281 5004293 1.0E-06 AAGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC - 5004299 5004311 1.0E-06 AAGGGGCGGGGCG 13 V_IRXB3_01_M01377 TRANSFAC - 4999976 4999992 9.0E-06 AATTTAAATGTTTGAAT 17 V_PBX1_04_M01357 TRANSFAC + 5000139 5000155 1.0E-06 CTATAAATCAAATAATA 17 V_CEBPE_01_M01772 TRANSFAC - 5000046 5000055 8.0E-06 ATTATGAAAT 10 V_PAX4_04_M00380 TRANSFAC + 4999865 4999894 2.0E-06 GAAAAGAAATGAACTTAAAAGCATCATCCT 30 V_CEBPA_Q6_M01866 TRANSFAC - 5000045 5000057 7.0E-06 AAATTATGAAATT 13 V_OCT4_01_M01125 TRANSFAC + 4999983 4999997 1.0E-06 CATTTAAATTTAAAT 15 V_OCT4_01_M01125 TRANSFAC - 4999984 4999998 3.0E-06 AATTTAAATTTAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.