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CHL1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10752 cell adhesion molecule with homology to L1CAM (close homolog of L1) chr3 + 233278 - 238778 238278 Transcription Factor Binding Sites   Download all TFBS in the CHL1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX19_TBX_DBD_dimeric_20_1 SELEX + 236173 236192 1.0E-06 TCTAGCACCTAGGTGCAACT 20 TBX19_TBX_DBD_dimeric_20_1 SELEX - 236173 236192 1.0E-06 AGTTGCACCTAGGTGCTAGA 20 CUX1_CUT_DBD_dimeric_17_1 SELEX - 236422 236438 6.0E-06 TTTGATACATTATCAAA 17 EWSR1-FLI1_MA0149.1 JASPAR + 235909 235926 5.0E-06 GGAGGGAGGGAGGGAGGC 18 EWSR1-FLI1_MA0149.1 JASPAR + 235912 235929 1.0E-06 GGGAGGGAGGGAGGCAGT 18 EWSR1-FLI1_MA0149.1 JASPAR + 235916 235933 8.0E-06 GGGAGGGAGGCAGTAAAT 18 STAT1_MA0137.2 JASPAR - 235807 235821 8.0E-06 TCATTCCTAGAAAAA 15 Pax4_MA0068.1 JASPAR - 238229 238258 5.0E-06 GACATTTAAAAGAAACGCCCCCCACCCCCT 30 RFX2_RFX_DBD_dimeric_15_1 SELEX + 242862 242876 1.0E-06 GGTTGCTTGGCAACC 15 RFX2_RFX_DBD_dimeric_15_1 SELEX - 242862 242876 0.0E+00 GGTTGCCAAGCAACC 15 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX + 235822 235834 8.0E-06 TGCCACATCACTA 13 RFX3_RFX_DBD_dimeric_15_1 SELEX + 242862 242876 6.0E-06 GGTTGCTTGGCAACC 15 RFX3_RFX_DBD_dimeric_15_1 SELEX - 242862 242876 0.0E+00 GGTTGCCAAGCAACC 15 Mycn_MA0104.2 JASPAR + 240141 240150 8.0E-06 CCCACGTGGC 10 RFX4_RFX_DBD_dimeric_15_1 SELEX - 242862 242876 0.0E+00 GGTTGCCAAGCAACC 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 238089 238103 4.0E-06 CACCACGCCCTTAAA 15 T_TBX_full_dimeric_16_1 SELEX + 236175 236190 0.0E+00 TAGCACCTAGGTGCAA 16 T_TBX_full_dimeric_16_1 SELEX - 236175 236190 1.0E-06 TTGCACCTAGGTGCTA 16 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 239608 239620 7.0E-06 CCAAATTAATCAC 13 Myf_MA0055.1 JASPAR + 236287 236298 2.0E-06 AAGCAGCAGCAG 12 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 238206 238221 1.0E-05 GGTTTCACTCGGTTCA 16 NRF1_NRF_full_dimeric_12_1 SELEX - 240072 240083 5.0E-06 CGCGCACGCGCA 12 RORA_1_MA0071.1 JASPAR + 236493 236502 1.0E-05 ATTTAGGTCA 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 239556 239568 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 239557 239569 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 239558 239570 6.0E-06 AAAAAAAAAAAAA 13 RORA_2_MA0072.1 JASPAR + 236490 236503 1.0E-06 GAAATTTAGGTCAT 14 IRF2_MA0051.1 JASPAR - 237487 237504 5.0E-06 CAAAAGCGAAGGCAACTC 18 V_DMRT4_01_M01149 TRANSFAC + 236428 236440 0.0E+00 AATGTATCAAAAA 13 V_FOXP1_01_M00987 TRANSFAC + 239558 239577 2.0E-06 TTTTTTTTTTTTTGGAGTGT 20 V_STAT5A_Q6_M01890 TRANSFAC + 235806 235818 0.0E+00 ATTTTTCTAGGAA 13 V_DBX1_01_M01483 TRANSFAC + 238118 238134 9.0E-06 AAGACAATTTTTAATAC 17 V_BCL6_Q3_01_M02085 TRANSFAC + 235808 235817 5.0E-06 TTTTCTAGGA 10 V_BCL6_Q3_01_M02085 TRANSFAC - 235810 235819 6.0E-06 ATTCCTAGAA 10 V_BCL6B_03_M02740 TRANSFAC + 235807 235822 0.0E+00 TTTTTCTAGGAATGAT 16 V_DMRT3_01_M01148 TRANSFAC - 236426 236440 0.0E+00 TTTTTGATACATTAT 15 V_SIX6_02_M01398 TRANSFAC + 236425 236441 1.0E-06 GATAATGTATCAAAAAT 17 V_HMGIY_Q3_M01010 TRANSFAC - 236434 236448 1.0E-06 AGTTCATATTTTTGA 15 V_RORA1_01_M00156 TRANSFAC + 236491 236503 1.0E-06 AAATTTAGGTCAT 13 V_EVI1_04_M00081 TRANSFAC + 236203 236217 7.0E-06 TGATAGATTAGGATT 15 V_EVI1_04_M00081 TRANSFAC - 239556 239570 6.0E-06 AAAAAAAAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC + 239555 239570 2.0E-06 CTTTTTTTTTTTTTTT 16 V_STAT_Q6_M00777 TRANSFAC + 235805 235817 7.0E-06 AATTTTTCTAGGA 13 V_STAT_Q6_M00777 TRANSFAC + 236473 236485 6.0E-06 GGTGTTTCTTGGA 13 V_MAFB_03_M02879 TRANSFAC - 242881 242895 6.0E-06 AAATGGCAGAATAAT 15 V_RORA_Q4_M01138 TRANSFAC + 236492 236502 6.0E-06 AATTTAGGTCA 11 V_OTX_Q1_M01117 TRANSFAC + 239610 239617 5.0E-06 GATTAATT 8 V_SOX11_04_M02899 TRANSFAC - 235797 235810 1.0E-06 AAAATTGTTTAGCA 14 V_SOX11_04_M02899 TRANSFAC - 238115 238128 4.0E-06 AAAATTGTCTTCTT 14 V_NKX61_03_M01489 TRANSFAC - 239604 239620 8.0E-06 CCAAATTAATCACTTTC 17 V_NKX24_01_M01350 TRANSFAC + 235832 235847 8.0E-06 CTAGCTACTTGTATTT 16 V_SP1_02_M01303 TRANSFAC + 238231 238241 5.0E-06 GGGGTGGGGGG 11 V_TCFAP2E_04_M02926 TRANSFAC - 239555 239568 4.0E-06 AAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 239556 239569 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 239557 239570 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 239558 239571 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 239560 239573 1.0E-06 TCCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 239561 239574 6.0E-06 CTCCAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 239563 239576 3.0E-06 CACTCCAAAAAAAA 14 V_PAX6_02_M01391 TRANSFAC + 239609 239624 5.0E-06 TGATTAATTTGGGGAG 16 V_TCFAP2C_04_M02925 TRANSFAC + 235846 235859 2.0E-06 TTGCCAAAAGGCAA 14 V_BCL6_02_M01185 TRANSFAC + 235806 235819 5.0E-06 ATTTTTCTAGGAAT 14 V_BCL6_02_M01185 TRANSFAC - 236304 236317 9.0E-06 TGCTTGCTAGAGAT 14 V_ELF4_04_M02850 TRANSFAC - 239554 239570 5.0E-06 AAAAAAAAAAAAAAAGC 17 V_ELF4_04_M02850 TRANSFAC - 239556 239572 4.0E-06 CCAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 239557 239573 2.0E-06 TCCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 239558 239574 1.0E-06 CTCCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 239559 239575 0.0E+00 ACTCCAAAAAAAAAAAA 17 V_ZNF219_01_M01122 TRANSFAC - 238232 238243 2.0E-06 CGCCCCCCACCC 12 V_MYF_01_M01302 TRANSFAC + 236287 236298 2.0E-06 AAGCAGCAGCAG 12 V_ZFP105_03_M02827 TRANSFAC - 239553 239567 2.0E-06 AAAAAAAAAAAAGCG 15 V_ZFP105_03_M02827 TRANSFAC - 239554 239568 9.0E-06 AAAAAAAAAAAAAGC 15 V_ZFP105_03_M02827 TRANSFAC - 239555 239569 0.0E+00 AAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 239556 239570 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 239557 239571 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 239558 239572 6.0E-06 CCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 239559 239573 1.0E-06 TCCAAAAAAAAAAAA 15 V_TBX18_01_M01262 TRANSFAC - 235768 235786 4.0E-06 AGTTTTGAAAATGGCATTT 19 V_SIX1_01_M01313 TRANSFAC + 236425 236441 6.0E-06 GATAATGTATCAAAAAT 17 V_NKX26_01_M01322 TRANSFAC + 235832 235847 9.0E-06 CTAGCTACTTGTATTT 16 V_E2F1_01_M01250 TRANSFAC + 238242 238249 1.0E-05 CGTTTCTT 8 V_RFX1_01_M00280 TRANSFAC + 242861 242877 0.0E+00 TGGTTGCTTGGCAACCT 17 V_RFX1_01_M00280 TRANSFAC - 242861 242877 0.0E+00 AGGTTGCCAAGCAACCA 17 V_IRF2_01_M00063 TRANSFAC - 237492 237504 1.0E-05 CAAAAGCGAAGGC 13 V_KROX_Q6_M00982 TRANSFAC - 238225 238238 8.0E-06 CCCACCCCCTCCCC 14 V_SIX3_01_M01358 TRANSFAC + 236425 236441 1.0E-06 GATAATGTATCAAAAAT 17 V_MAZ_Q6_01_M02023 TRANSFAC + 235910 235923 3.0E-06 GAGGGAGGGAGGGA 14 V_STAT5A_02_M00460 TRANSFAC - 235795 235818 7.0E-06 TTCCTAGAAAAATTGTTTAGCAGA 24 V_BCL6_Q3_M01171 TRANSFAC + 235808 235817 5.0E-06 TTTTCTAGGA 10 V_STAT4_Q5_M02117 TRANSFAC - 238244 238253 2.0E-06 TTAAAAGAAA 10 V_MYCN_01_M02259 TRANSFAC + 240141 240150 8.0E-06 CCCACGTGGC 10 V_BRACH_01_M00150 TRANSFAC + 236171 236194 1.0E-06 TCTCTAGCACCTAGGTGCAACTGT 24 V_SIX2_01_M01433 TRANSFAC + 236425 236441 6.0E-06 GATAATGTATCAAAAAT 17 V_TFIII_Q6_M00706 TRANSFAC - 238285 238293 1.0E-05 AGAGGTAGG 9 V_OTX2_Q3_M01719 TRANSFAC + 239605 239617 6.0E-06 AAAGTGATTAATT 13 V_SOX15_03_M02799 TRANSFAC + 235797 235813 1.0E-05 TGCTAAACAATTTTTCT 17 V_MTF1_06_M02882 TRANSFAC - 239554 239567 5.0E-06 AAAAAAAAAAAAGC 14 V_MTF1_06_M02882 TRANSFAC - 239555 239568 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 239556 239569 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 239557 239570 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 239558 239571 8.0E-06 CAAAAAAAAAAAAA 14 V_NKX25_03_M01414 TRANSFAC + 235832 235847 9.0E-06 CTAGCTACTTGTATTT 16 V_POU5F1_01_M01307 TRANSFAC - 236512 236521 9.0E-06 AATGCAAAAG 10 V_FAC1_01_M00456 TRANSFAC - 239556 239569 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 239557 239570 3.0E-06 AAAAAAAAAAAAAA 14 V_OSR2_04_M02889 TRANSFAC + 235831 235846 2.0E-06 ACTAGCTACTTGTATT 16 V_E2F6_01_M01252 TRANSFAC + 238242 238249 1.0E-05 CGTTTCTT 8 V_NANOG_01_M01123 TRANSFAC - 236230 236241 4.0E-06 AGACCCATTTCC 12 V_TCF7_04_M02921 TRANSFAC - 238122 238136 0.0E+00 ACGTATTAAAAATTG 15 V_ZFP206_01_M01742 TRANSFAC - 240020 240030 9.0E-06 CGCGCACGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 240072 240082 7.0E-06 TGCGCGTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 240073 240083 9.0E-06 CGCGCACGCGC 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 238243 238255 8.0E-06 ATTTAAAAGAAAC 13 V_PLZF_02_M01075 TRANSFAC + 236424 236452 8.0E-06 TGATAATGTATCAAAAATATGAACTCATC 29 V_ZFP281_01_M01597 TRANSFAC + 238229 238239 5.0E-06 AGGGGGTGGGG 11 V_OSR1_04_M02888 TRANSFAC + 235831 235846 9.0E-06 ACTAGCTACTTGTATT 16 V_TBX22_01_M01195 TRANSFAC - 235768 235786 5.0E-06 AGTTTTGAAAATGGCATTT 19 V_SOX8_03_M02808 TRANSFAC - 235797 235813 6.0E-06 AGAAAAATTGTTTAGCA 17 V_SOX14_04_M02901 TRANSFAC + 236220 236236 9.0E-06 ATGTTGAATGGGAAATG 17 V_ZFP281_04_M02831 TRANSFAC - 238227 238241 9.0E-06 CCCCCCACCCCCTCC 15 V_SRF_06_M02916 TRANSFAC - 239552 239568 2.0E-06 AAAAAAAAAAAAAGCGA 17 V_SRF_06_M02916 TRANSFAC - 239553 239569 2.0E-06 AAAAAAAAAAAAAAGCG 17 V_SRF_06_M02916 TRANSFAC - 239554 239570 1.0E-06 AAAAAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC - 239555 239571 0.0E+00 CAAAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC - 239556 239572 0.0E+00 CCAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 239557 239573 2.0E-06 TCCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 239558 239574 1.0E-06 CTCCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 239559 239575 4.0E-06 ACTCCAAAAAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 235909 235926 5.0E-06 GGAGGGAGGGAGGGAGGC 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 235912 235929 1.0E-06 GGGAGGGAGGGAGGCAGT 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 235916 235933 8.0E-06 GGGAGGGAGGCAGTAAAT 18 V_SIX6_01_M01345 TRANSFAC + 236425 236441 2.0E-06 GATAATGTATCAAAAAT 17 V_SOX15_04_M02903 TRANSFAC - 235766 235780 9.0E-06 GAAAATGGCATTTCA 15 V_FOXO4_01_M00472 TRANSFAC + 235799 235809 8.0E-06 CTAAACAATTT 11 V_SOX5_07_M02909 TRANSFAC - 235797 235813 0.0E+00 AGAAAAATTGTTTAGCA 17 V_TCF3_05_M02920 TRANSFAC - 239560 239574 2.0E-06 CTCCAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 239561 239575 2.0E-06 ACTCCAAAAAAAAAA 15 V_MIF1_01_M00279 TRANSFAC + 242861 242878 0.0E+00 TGGTTGCTTGGCAACCTG 18 V_PAX4_04_M00380 TRANSFAC + 236425 236454 7.0E-06 GATAATGTATCAAAAATATGAACTCATCCT 30 V_RORA2_01_M00157 TRANSFAC + 236491 236503 0.0E+00 AAATTTAGGTCAT 13 V_DMRT5_01_M01150 TRANSFAC - 236425 236439 0.0E+00 TTTTGATACATTATC 15 V_NKX21_01_M01312 TRANSFAC + 235832 235847 3.0E-06 CTAGCTACTTGTATTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.