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RRH Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10692 retinal pigment epithelium-derived rhodopsin homolog chr4 + 110744149 - 110749649 110749149 Transcription Factor Binding Sites   Download all TFBS in the RRH promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 110748065 110748083 9.0E-06 GAACCACTAGAGGGCTATA 19 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 110748038 110748050 1.0E-05 TTTATAAAATTAA 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 110752543 110752555 5.0E-06 CTTATTAAATAAA 13 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 110752543 110752555 9.0E-06 CTTATTAAATAAA 13 RHOXF1_homeodomain_full_dimeric_9_1 SELEX - 110748001 110748009 8.0E-06 AGATAATCC 9 RUNX3_RUNX_full_monomeric_10_1 SELEX + 110752579 110752588 1.0E-05 AAACCACAGA 10 Foxq1_MA0040.1 JASPAR + 110748130 110748140 7.0E-06 TAATGTTTACT 11 ALX3_homeodomain_full_dimeric_13_1 SELEX + 110752543 110752555 7.0E-06 CTTATTAAATAAA 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 110748038 110748050 9.0E-06 TTAATTTTATAAA 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 110752543 110752555 8.0E-06 CTTATTAAATAAA 13 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 110752499 110752515 7.0E-06 TAATTTCTATCATTCCT 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 110752544 110752554 1.0E-05 TTATTTAATAA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 110748038 110748050 7.0E-06 TTAATTTTATAAA 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 110752543 110752555 4.0E-06 TTTATTTAATAAG 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 110752543 110752555 3.0E-06 TTTATTTAATAAG 13 EN1_homeodomain_full_dimeric_14_1 SELEX + 110748053 110748066 7.0E-06 TAAGTGGGTAAATA 14 EN1_homeodomain_full_dimeric_14_1 SELEX - 110748053 110748066 8.0E-06 TATTTACCCACTTA 14 Evi1_MA0029.1 JASPAR + 110752613 110752626 1.0E-05 ATGAAAAGACAAGG 14 RUNX1_MA0002.2 JASPAR - 110752579 110752589 0.0E+00 TTCTGTGGTTT 11 DPRX_homeodomain_DBD_monomeric_11_1 SELEX - 110748000 110748010 3.0E-06 AAGATAATCCT 11 DPRX_homeodomain_DBD_monomeric_10_1 SELEX + 110747999 110748008 2.0E-06 AAGGATTATC 10 V_DMRT4_01_M01149 TRANSFAC + 110752628 110752640 3.0E-06 AAAGTAACAGTTA 13 V_NFAT_Q4_01_M00935 TRANSFAC + 110752687 110752696 7.0E-06 TTGGAAATTT 10 V_HOXA9_01_M01351 TRANSFAC + 110748035 110748051 4.0E-06 ATTTTTATAAAATTAAA 17 V_OBOX6_01_M01445 TRANSFAC + 110747995 110748009 4.0E-06 GCAAAAGGATTATCT 15 V_DBX1_01_M01483 TRANSFAC - 110752541 110752557 2.0E-06 GATTTATTTAATAAGTG 17 V_AML_Q6_M00769 TRANSFAC - 110752577 110752591 5.0E-06 ATTTCTGTGGTTTTT 15 V_CDX2_Q5_01_M01659 TRANSFAC - 110748035 110748045 1.0E-05 TTTATAAAAAT 11 V_OBOX5_05_M03066 TRANSFAC + 110747996 110748012 8.0E-06 CAAAAGGATTATCTTAG 17 V_FOXA2_04_M02749 TRANSFAC - 110748128 110748144 4.0E-06 AATCAGTAAACATTAGA 17 V_OBOX1_01_M01450 TRANSFAC + 110747995 110748011 5.0E-06 GCAAAAGGATTATCTTA 17 V_CEBP_Q3_M00770 TRANSFAC + 110752510 110752521 5.0E-06 AAATTAAGCAAT 12 V_CEBP_Q3_M00770 TRANSFAC + 110752683 110752694 8.0E-06 TAGTTTGGAAAT 12 V_HMGIY_Q3_M01010 TRANSFAC - 110748039 110748053 4.0E-06 AGTTTAATTTTATAA 15 V_MMEF2_Q6_M00405 TRANSFAC - 110748058 110748073 9.0E-06 AGGGCTATATTTACCC 16 V_SPDEF_04_M02915 TRANSFAC - 110748027 110748042 2.0E-06 ATAAAAATCCTAGAAT 16 V_PROP1_01_M01294 TRANSFAC - 110748039 110748049 2.0E-06 TAATTTTATAA 11 V_CEBP_01_M00159 TRANSFAC + 110752684 110752696 4.0E-06 AGTTTGGAAATTT 13 V_CEBP_Q2_M00190 TRANSFAC - 110752510 110752523 0.0E+00 ATATTGCTTAATTT 14 V_HNF3_Q6_01_M01012 TRANSFAC + 110748128 110748145 5.0E-06 TCTAATGTTTACTGATTT 18 V_LHX3_01_M01471 TRANSFAC + 110752543 110752559 3.0E-06 CTTATTAAATAAATCTG 17 V_PRX2_Q2_M02115 TRANSFAC + 110748042 110748050 5.0E-06 TAAAATTAA 9 V_HOXD13_01_M01404 TRANSFAC - 110748033 110748048 1.0E-06 AATTTTATAAAAATCC 16 V_HOXD13_01_M01404 TRANSFAC + 110748035 110748050 0.0E+00 ATTTTTATAAAATTAA 16 V_CEBPB_01_M00109 TRANSFAC + 110752510 110752523 0.0E+00 AAATTAAGCAATAT 14 V_VSX1_01_M01335 TRANSFAC - 110752542 110752558 1.0E-05 AGATTTATTTAATAAGT 17 V_ELF4_04_M02850 TRANSFAC + 110748038 110748054 8.0E-06 TTTATAAAATTAAACTA 17 V_OBOX5_02_M01480 TRANSFAC + 110747996 110748012 8.0E-06 CAAAAGGATTATCTTAG 17 V_FREAC3_01_M00291 TRANSFAC + 110748055 110748070 5.0E-06 AGTGGGTAAATATAGC 16 V_CEBPE_Q6_M01868 TRANSFAC - 110752685 110752698 3.0E-06 CTAAATTTCCAAAC 14 V_LMX1_01_M01409 TRANSFAC - 110752542 110752558 1.0E-06 AGATTTATTTAATAAGT 17 V_LMX1_01_M01409 TRANSFAC + 110752543 110752559 9.0E-06 CTTATTAAATAAATCTG 17 V_HOXB13_01_M01467 TRANSFAC - 110748033 110748048 4.0E-06 AATTTTATAAAAATCC 16 V_RUNX1_01_M02257 TRANSFAC - 110752579 110752589 0.0E+00 TTCTGTGGTTT 11 V_XFD3_01_M00269 TRANSFAC - 110748087 110748100 1.0E-05 AGTGTAAGCATAAA 14 V_XFD3_01_M00269 TRANSFAC - 110748129 110748142 1.0E-06 TCAGTAAACATTAG 14 V_CEBPB_02_M00117 TRANSFAC - 110752510 110752523 0.0E+00 ATATTGCTTAATTT 14 V_RSRFC4_Q2_M00407 TRANSFAC + 110748057 110748073 3.0E-06 TGGGTAAATATAGCCCT 17 V_PXRRXR_02_M01153 TRANSFAC + 110752854 110752861 1.0E-05 AGAGTTCA 8 V_AMEF2_Q6_M00403 TRANSFAC - 110748056 110748073 2.0E-06 AGGGCTATATTTACCCAC 18 V_RXRA_04_M02895 TRANSFAC + 110752678 110752693 8.0E-06 GCAAGTAGTTTGGAAA 16 V_EVI1_01_M00078 TRANSFAC + 110752770 110752785 9.0E-06 GGATAGGAAAAGAGAA 16 V_MAZ_Q6_01_M02023 TRANSFAC + 110752696 110752709 3.0E-06 TAGGGAGGAGAGGA 14 V_HNF1_Q6_01_M01011 TRANSFAC + 110748036 110748056 7.0E-06 TTTTTATAAAATTAAACTAAG 21 V_HNF1_Q6_01_M01011 TRANSFAC + 110752663 110752683 5.0E-06 CTCAGTTAATCATAAGCAAGT 21 V_OCT1_04_M00138 TRANSFAC - 110748028 110748050 7.0E-06 TTAATTTTATAAAAATCCTAGAA 23 V_PIT1_01_M01465 TRANSFAC + 110752541 110752557 4.0E-06 CACTTATTAAATAAATC 17 V_PEBP_Q6_M00984 TRANSFAC + 110752577 110752591 3.0E-06 AAAAACCACAGAAAT 15 V_BBX_04_M02843 TRANSFAC - 110748095 110748111 2.0E-06 CCAAAGTTAACAGTGTA 17 V_XFD2_01_M00268 TRANSFAC - 110748129 110748142 7.0E-06 TCAGTAAACATTAG 14 V_MEF2_Q6_01_M00941 TRANSFAC - 110748060 110748071 2.0E-06 GGCTATATTTAC 12 V_NCX_02_M01420 TRANSFAC - 110752541 110752557 2.0E-06 GATTTATTTAATAAGTG 17 V_HB24_01_M01399 TRANSFAC + 110752541 110752555 3.0E-06 CACTTATTAAATAAA 15 V_ARID3A_04_M02735 TRANSFAC + 110748034 110748050 6.0E-06 GATTTTTATAAAATTAA 17 V_ARID3A_04_M02735 TRANSFAC - 110752542 110752558 9.0E-06 AGATTTATTTAATAAGT 17 V_ARID3A_04_M02735 TRANSFAC + 110752543 110752559 9.0E-06 CTTATTAAATAAATCTG 17 V_TBP_06_M02814 TRANSFAC - 110748032 110748047 1.0E-05 ATTTTATAAAAATCCT 16 V_TBP_06_M02814 TRANSFAC + 110748034 110748049 1.0E-06 GATTTTTATAAAATTA 16 V_TBP_06_M02814 TRANSFAC - 110748034 110748049 1.0E-06 TAATTTTATAAAAATC 16 V_TBP_06_M02814 TRANSFAC + 110748036 110748051 2.0E-06 TTTTTATAAAATTAAA 16 V_TBP_06_M02814 TRANSFAC - 110748036 110748051 1.0E-06 TTTAATTTTATAAAAA 16 V_TBP_06_M02814 TRANSFAC + 110752542 110752557 3.0E-06 ACTTATTAAATAAATC 16 V_TBP_06_M02814 TRANSFAC + 110752544 110752559 8.0E-06 TTATTAAATAAATCTG 16 V_CTCF_02_M01259 TRANSFAC - 110748067 110748086 8.0E-06 ACAGAACCACTAGAGGGCTA 20 V_CTCF_01_M01200 TRANSFAC - 110748065 110748084 9.0E-06 AGAACCACTAGAGGGCTATA 20 V_LIM1_01_M01418 TRANSFAC - 110752542 110752558 2.0E-06 AGATTTATTTAATAAGT 17 V_HOXD9_Q2_M01834 TRANSFAC - 110748086 110748095 4.0E-06 AAGCATAAAA 10 V_ZFP105_04_M02931 TRANSFAC + 110752543 110752559 2.0E-06 CTTATTAAATAAATCTG 17 V_HOXA7_02_M01336 TRANSFAC - 110752542 110752558 5.0E-06 AGATTTATTTAATAAGT 17 V_MTF1_06_M02882 TRANSFAC - 110748034 110748047 6.0E-06 ATTTTATAAAAATC 14 V_MTF1_06_M02882 TRANSFAC + 110752542 110752555 3.0E-06 ACTTATTAAATAAA 14 V_BRN4_01_M01473 TRANSFAC + 110752541 110752557 7.0E-06 CACTTATTAAATAAATC 17 V_CEBPA_01_M00116 TRANSFAC - 110752510 110752523 0.0E+00 ATATTGCTTAATTT 14 V_NKX61_02_M01469 TRANSFAC + 110752542 110752557 8.0E-06 ACTTATTAAATAAATC 16 V_TCF7_04_M02921 TRANSFAC + 110752542 110752556 2.0E-06 ACTTATTAAATAAAT 15 V_LMX1B_01_M01363 TRANSFAC + 110752542 110752558 3.0E-06 ACTTATTAAATAAATCT 17 V_LMX1B_01_M01363 TRANSFAC - 110752543 110752559 4.0E-06 CAGATTTATTTAATAAG 17 V_FOX_Q2_M00809 TRANSFAC + 110748130 110748142 5.0E-06 TAATGTTTACTGA 13 V_RSRFC4_01_M00026 TRANSFAC - 110748057 110748072 6.0E-06 GGGCTATATTTACCCA 16 V_CEBPB_Q6_M01896 TRANSFAC + 110752513 110752522 4.0E-06 TTAAGCAATA 10 V_FOXJ2_01_M00422 TRANSFAC - 110748128 110748145 0.0E+00 AAATCAGTAAACATTAGA 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 110752579 110752586 1.0E-05 TGTGGTTT 8 V_GSC_01_M01428 TRANSFAC - 110747996 110748012 9.0E-06 CTAAGATAATCCTTTTG 17 V_PPARG_02_M00515 TRANSFAC + 110748054 110748076 0.0E+00 AAGTGGGTAAATATAGCCCTCTA 23 V_IRF1_01_M00062 TRANSFAC + 110752626 110752638 4.0E-06 GAAAAGTAACAGT 13 V_FREAC4_01_M00292 TRANSFAC - 110748096 110748111 9.0E-06 CCAAAGTTAACAGTGT 16 V_HMEF2_Q6_M00406 TRANSFAC - 110748056 110748071 9.0E-06 GGCTATATTTACCCAC 16 V_LHX5_01_M01353 TRANSFAC + 110752543 110752559 5.0E-06 CTTATTAAATAAATCTG 17 V_CEBP_Q2_01_M00912 TRANSFAC - 110752510 110752521 1.0E-06 ATTGCTTAATTT 12 V_BRN3C_01_M01408 TRANSFAC + 110752542 110752557 7.0E-06 ACTTATTAAATAAATC 16 V_HOXA10_01_M01464 TRANSFAC + 110748040 110748055 6.0E-06 TATAAAATTAAACTAA 16 V_HOXD10_01_M01375 TRANSFAC + 110748035 110748051 1.0E-06 ATTTTTATAAAATTAAA 17 V_OBOX5_01_M01381 TRANSFAC + 110747996 110748012 3.0E-06 CAAAAGGATTATCTTAG 17 V_OBOX6_02_M03068 TRANSFAC + 110747995 110748009 4.0E-06 GCAAAAGGATTATCT 15 V_PBX1_04_M01357 TRANSFAC - 110752744 110752760 9.0E-06 CCATCCTTCAAACTTCA 17 V_OBOX6_06_M03067 TRANSFAC - 110747996 110748012 3.0E-06 CTAAGATAATCCTTTTG 17 V_PAX6_01_M00097 TRANSFAC - 110752738 110752758 8.0E-06 ATCCTTCAAACTTCAGTTCAA 21 V_CEBPA_Q6_M01866 TRANSFAC + 110752510 110752522 1.0E-06 AAATTAAGCAATA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.