Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CXCR6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10663 chemokine (C-X-C motif) receptor 6 chr3 + 45979972 - 45985472 45984972 Transcription Factor Binding Sites   Download all TFBS in the CXCR6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 45989746 45989763 3.0E-06 TATGTAAATGTATATACC 18 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 45985032 45985042 3.0E-06 AATGACTCACC 11 CTCF_MA0139.1 JASPAR + 45980438 45980456 0.0E+00 TGACCACTAGAGGGCACCC 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 45989748 45989760 6.0E-06 ATATACATTTACA 13 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 45989080 45989087 5.0E-06 ATAAACAA 8 NF-kappaB_MA0061.1 JASPAR - 45981092 45981101 7.0E-06 GGGATTTTCC 10 SOX10_HMG_full_dimeric_15_3 SELEX - 45989651 45989665 9.0E-06 ATTCATTACAGTCTT 15 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX + 45989933 45989944 5.0E-06 AGTCGTAAACTT 12 ZNF713_C2H2_full_monomeric_17_1 SELEX - 45989944 45989960 1.0E-06 TAGAGCAATGCCATGAA 17 NHLH1_MA0048.1 JASPAR + 45985154 45985165 1.0E-05 GCTCAGCTGCTC 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 45989746 45989754 3.0E-06 TATGTAAAT 9 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 45983909 45983922 5.0E-06 AAGGGCAAATGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 45983909 45983922 3.0E-06 AAGGGCAAATGTCA 14 POU2F3_POU_DBD_monomeric_9_1 SELEX + 45989746 45989754 4.0E-06 TATGTAAAT 9 SOX8_HMG_full_dimeric_17_1 SELEX - 45985179 45985195 7.0E-06 AGCAAATGGCAGTGATG 17 SOX7_HMG_full_dimeric_17_2 SELEX + 45983854 45983870 5.0E-06 AATGAGTGTTAGTCTCT 17 STAT1_MA0137.2 JASPAR - 45984047 45984061 4.0E-06 GCTTTCCCAGAAGCA 15 HOXC11_homeodomain_full_monomeric_11_1 SELEX + 45989933 45989943 9.0E-06 AGTCGTAAACT 11 POU2F2_POU_DBD_monomeric_11_1 SELEX + 45989745 45989755 5.0E-06 GTATGTAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 45989746 45989754 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 45989746 45989754 5.0E-06 TATGTAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 45989748 45989761 7.0E-06 TATATACATTTACA 14 Pax4_MA0068.1 JASPAR + 45983598 45983627 4.0E-06 GAATTCATTCAAAAAGGCCTGCAAACCTAC 30 Tcfcp2l1_MA0145.1 JASPAR - 45985003 45985016 3.0E-06 CCAGTTTGTTCCAG 14 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 45988514 45988529 9.0E-06 GGTTACCATGACGAGG 16 SOX8_HMG_full_dimeric_13_1 SELEX + 45983855 45983867 7.0E-06 ATGAGTGTTAGTC 13 Foxq1_MA0040.1 JASPAR + 45989078 45989088 9.0E-06 CTTTGTTTATA 11 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 45989758 45989769 1.0E-05 TATACCCACACA 12 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 45984041 45984050 6.0E-06 AGCAGCTGCC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 45983908 45983922 4.0E-06 AAGGGCAAATGTCAA 15 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 45981090 45981103 6.0E-06 CTGGAAAATCCCTA 14 CTCF_C2H2_full_monomeric_17_1 SELEX - 45980439 45980455 0.0E+00 GGTGCCCTCTAGTGGTC 17 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 45985002 45985017 7.0E-06 TCTGGAACAAACTGGC 16 SOX7_HMG_full_dimeric_17_1 SELEX - 45989816 45989832 9.0E-06 TAACAGTTTTATTTCTT 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 45985088 45985104 9.0E-06 GAATACCAACAATACCT 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 45989878 45989894 2.0E-06 ATATTCCAGGCATACCA 17 POU3F1_POU_DBD_monomeric_12_1 SELEX + 45989745 45989756 5.0E-06 GTATGTAAATGT 12 Hoxa11_homeodomain_DBD_monomeric_12_1 SELEX + 45989933 45989944 3.0E-06 AGTCGTAAACTT 12 JDP2_bZIP_full_dimeric_9_1 SELEX - 45985033 45985041 7.0E-06 ATGACTCAC 9 Pou5f1_MA0142.1 JASPAR + 45989096 45989110 3.0E-06 CATTCTCATGGAGAA 15 Pou5f1_MA0142.1 JASPAR - 45989700 45989714 1.0E-06 TTTTAAAATGCAAAG 15 POU2F1_POU_DBD_monomeric_12_1 SELEX + 45989744 45989755 1.0E-05 CGTATGTAAATG 12 TEAD1_TEA_full_dimeric_17_1 SELEX - 45985088 45985104 4.0E-06 GAATACCAACAATACCT 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 45989878 45989894 1.0E-06 ATATTCCAGGCATACCA 17 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX - 45983909 45983922 7.0E-06 AAGGGCAAATGTCA 14 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX + 45989933 45989943 7.0E-06 AGTCGTAAACT 11 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 45985172 45985181 8.0E-06 CAAATTCCAT 10 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 45989080 45989087 5.0E-06 ATAAACAA 8 POU3F2_POU_DBD_monomeric_12_1 SELEX + 45989745 45989756 6.0E-06 GTATGTAAATGT 12 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX + 45989933 45989943 5.0E-06 AGTCGTAAACT 11 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 45989746 45989756 8.0E-06 TATGTAAATGT 11 V_NFAT_Q4_01_M00935 TRANSFAC + 45981090 45981099 7.0E-06 CTGGAAAATC 10 V_NFAT_Q4_01_M00935 TRANSFAC - 45989719 45989728 1.0E-06 TTGGAAAATT 10 V_MINI20_B_M00324 TRANSFAC + 45987964 45987984 4.0E-06 AACAGACACCATGGCAGAGCA 21 V_MEQ_01_M02049 TRANSFAC - 45983735 45983743 2.0E-06 AACACACAT 9 V_CEBPG_Q6_M00622 TRANSFAC - 45989676 45989688 4.0E-06 TCCACTTCAGAAA 13 V_NFKAPPAB65_01_M00052 TRANSFAC - 45981092 45981101 7.0E-06 GGGATTTTCC 10 V_NFKB_C_M00208 TRANSFAC - 45981091 45981102 0.0E+00 AGGGATTTTCCA 12 V_FREAC7_01_M00293 TRANSFAC - 45989077 45989092 3.0E-06 AAGCTATAAACAAAGC 16 V_GAF_Q6_M01209 TRANSFAC + 45985106 45985116 3.0E-06 CAGATTCCTGT 11 V_NFKB_Q6_01_M00774 TRANSFAC + 45981087 45981102 1.0E-06 TGCCTGGAAAATCCCT 16 V_AML_Q6_M00769 TRANSFAC + 45988506 45988520 6.0E-06 TCATATGTGGTTACC 15 V_ALX4_01_M00619 TRANSFAC - 45989140 45989152 7.0E-06 CCTGAGAAGAAGC 13 V_YY1_02_M00069 TRANSFAC - 45987964 45987983 2.0E-06 GCTCTGCCATGGTGTCTGTT 20 V_HMGIY_Q3_M01010 TRANSFAC + 45989714 45989728 3.0E-06 AATGAAATTTTCCAA 15 V_EVI1_04_M00081 TRANSFAC + 45989812 45989826 8.0E-06 AGCTAAGAAATAAAA 15 V_MMEF2_Q6_M00405 TRANSFAC + 45989705 45989720 9.0E-06 CATTTTAAAAATGAAA 16 V_GATA3_03_M00351 TRANSFAC - 45983637 45983646 5.0E-06 AAAGATCTGA 10 V_POU5F1_02_M02245 TRANSFAC + 45989096 45989110 3.0E-06 CATTCTCATGGAGAA 15 V_POU5F1_02_M02245 TRANSFAC - 45989700 45989714 1.0E-06 TTTTAAAATGCAAAG 15 V_HOXA13_02_M01297 TRANSFAC + 45989819 45989827 1.0E-06 AAATAAAAC 9 V_IRF_Q6_01_M00972 TRANSFAC + 45989711 45989721 2.0E-06 AAAAATGAAAT 11 V_SRY_02_M00160 TRANSFAC - 45985038 45985049 6.0E-06 TAAAACAAATGA 12 V_IRF2_Q6_M01882 TRANSFAC + 45989709 45989724 4.0E-06 TTAAAAATGAAATTTT 16 V_NFAT3_Q3_M01734 TRANSFAC + 45989718 45989727 7.0E-06 AAATTTTCCA 10 V_OCT1_01_M00135 TRANSFAC + 45989741 45989759 3.0E-06 AAACGTATGTAAATGTATA 19 V_POU2F3_01_M01476 TRANSFAC + 45989743 45989758 6.0E-06 ACGTATGTAAATGTAT 16 V_AP4_Q6_M00176 TRANSFAC - 45984912 45984921 2.0E-06 CTCAGCTGGT 10 V_CEBP_Q2_M00190 TRANSFAC - 45989718 45989731 5.0E-06 ACATTGGAAAATTT 14 V_PPAR_DR1_Q2_M00763 TRANSFAC + 45983909 45983921 5.0E-06 TGACATTTGCCCT 13 V_HEN1_01_M00068 TRANSFAC + 45985149 45985170 2.0E-06 ATGGAGCTCAGCTGCTCTTCGT 22 V_FOXP3_01_M01599 TRANSFAC - 45989080 45989087 5.0E-06 ATAAACAA 8 V_HOXA13_03_M01430 TRANSFAC + 45989930 45989945 5.0E-06 ATAAGTCGTAAACTTT 16 V_HOXC13_01_M01317 TRANSFAC + 45989930 45989945 6.0E-06 ATAAGTCGTAAACTTT 16 V_HELIOSA_01_M01003 TRANSFAC - 45981095 45981105 7.0E-06 CATAGGGATTT 11 V_PAX_Q6_M00808 TRANSFAC + 45985003 45985013 2.0E-06 CTGGAACAAAC 11 V_ELF4_04_M02850 TRANSFAC + 45984923 45984939 1.0E-06 GCTCTTAAAAAATGTTC 17 V_BACH1_01_M00495 TRANSFAC + 45985030 45985044 8.0E-06 CTGGTGAGTCATTTG 15 V_STAF_01_M00262 TRANSFAC + 45983476 45983497 6.0E-06 TTTGTCCACCATTCCCTACATC 22 V_TEF_Q6_M00672 TRANSFAC + 45980373 45980384 1.0E-05 ATGTTCAAGCAA 12 V_NFAT_Q6_M00302 TRANSFAC - 45989719 45989730 0.0E+00 CATTGGAAAATT 12 V_HES1_Q2_M01009 TRANSFAC - 45980525 45980539 2.0E-06 AAGCCGCGTGGGCAG 15 V_RSRFC4_Q2_M00407 TRANSFAC + 45989706 45989722 6.0E-06 ATTTTAAAAATGAAATT 17 V_OLF1_01_M00261 TRANSFAC + 45980795 45980816 4.0E-06 AAATGCTCCCAAAGGAGGACAT 22 V_IRX4_01_M01410 TRANSFAC - 45989152 45989168 7.0E-06 ACAGTACATGTTCATGC 17 V_HOXD12_01_M01380 TRANSFAC + 45989930 45989946 1.0E-06 ATAAGTCGTAAACTTTC 17 V_IRF4_04_M02872 TRANSFAC + 45985098 45985112 1.0E-06 GGTATTCTCAGATTC 15 V_AP1_Q6_01_M00925 TRANSFAC + 45982361 45982369 7.0E-06 ATGACTCAG 9 V_HNF3_Q6_M00791 TRANSFAC - 45983774 45983786 4.0E-06 ATAGGCAAACAGA 13 V_IRF_Q6_M00772 TRANSFAC - 45989711 45989725 5.0E-06 GAAAATTTCATTTTT 15 V_HOXC11_01_M01329 TRANSFAC + 45989930 45989945 1.0E-06 ATAAGTCGTAAACTTT 16 V_MEF2_03_M00232 TRANSFAC + 45985045 45985066 8.0E-06 TTTTACTCTTTATATTGAAAAG 22 V_HOXD11_01_M01434 TRANSFAC + 45989930 45989946 1.0E-06 ATAAGTCGTAAACTTTC 17 V_GLIS2_03_M02759 TRANSFAC - 45989199 45989214 3.0E-06 TTTAGACCCCCTACTT 16 V_JUNDM2_04_M02876 TRANSFAC - 45985030 45985045 9.0E-06 ACAAATGACTCACCAG 16 V_OCT1_04_M00138 TRANSFAC + 45989739 45989761 0.0E+00 ACAAACGTATGTAAATGTATATA 23 V_OCT1_04_M00138 TRANSFAC + 45989745 45989767 3.0E-06 GTATGTAAATGTATATACCCACA 23 V_HBP1_03_M02762 TRANSFAC - 45983597 45983612 0.0E+00 TTTTTGAATGAATTCG 16 V_AP4_Q5_M00175 TRANSFAC - 45984912 45984921 1.0E-06 CTCAGCTGGT 10 V_HOXC12_01_M01437 TRANSFAC + 45989930 45989946 0.0E+00 ATAAGTCGTAAACTTTC 17 V_SOX12_04_M02900 TRANSFAC + 45989889 45989904 7.0E-06 GAATATACAAAAAAGT 16 V_PEBP_Q6_M00984 TRANSFAC - 45988506 45988520 7.0E-06 GGTAACCACATATGA 15 V_PAX8_01_M00717 TRANSFAC - 45983600 45983614 2.0E-06 CCTTTTTGAATGAAT 15 V_AP1_C_M00199 TRANSFAC + 45982361 45982369 6.0E-06 ATGACTCAG 9 V_OCAB_Q6_M02113 TRANSFAC + 45989035 45989045 6.0E-06 ATTTGCAAGTC 11 V_OCAB_Q6_M02113 TRANSFAC - 45989699 45989709 4.0E-06 AAATGCAAAGC 11 V_HNF4_DR1_Q3_M00764 TRANSFAC + 45983909 45983921 3.0E-06 TGACATTTGCCCT 13 V_STAT4_Q5_M02117 TRANSFAC + 45984050 45984059 7.0E-06 TTCTGGGAAA 10 V_HOXA11_01_M01378 TRANSFAC + 45989930 45989945 1.0E-06 ATAAGTCGTAAACTTT 16 V_CTCF_02_M01259 TRANSFAC + 45980435 45980454 0.0E+00 GCATGACCACTAGAGGGCAC 20 V_STAT3_03_M01595 TRANSFAC + 45984048 45984063 0.0E+00 GCTTCTGGGAAAGCAG 16 V_IRX3_01_M01318 TRANSFAC + 45989153 45989169 4.0E-06 CATGAACATGTACTGTT 17 V_OCT4_02_M01124 TRANSFAC + 45989097 45989111 5.0E-06 ATTCTCATGGAGAAG 15 V_CTCF_01_M01200 TRANSFAC + 45980437 45980456 0.0E+00 ATGACCACTAGAGGGCACCC 20 V_OCT_Q6_M00795 TRANSFAC - 45989746 45989756 6.0E-06 ACATTTACATA 11 V_IRX5_01_M01472 TRANSFAC + 45989153 45989169 6.0E-06 CATGAACATGTACTGTT 17 V_PAX8_B_M00328 TRANSFAC - 45983598 45983615 7.0E-06 GCCTTTTTGAATGAATTC 18 V_FOXO1_Q5_M01216 TRANSFAC - 45989079 45989087 2.0E-06 ATAAACAAA 9 V_MAF_Q6_01_M00983 TRANSFAC + 45985031 45985041 8.0E-06 TGGTGAGTCAT 11 V_NEUROD_02_M01288 TRANSFAC + 45985191 45985202 0.0E+00 TTGCTGCTGTGT 12 V_OTX2_Q3_M01719 TRANSFAC + 45983796 45983808 1.0E-05 ACTAGGATTAGAT 13 V_IRX3_02_M01485 TRANSFAC + 45989153 45989169 9.0E-06 CATGAACATGTACTGTT 17 V_AP1_Q4_01_M00926 TRANSFAC - 45982361 45982368 1.0E-05 TGAGTCAT 8 V_AP1_Q4_01_M00926 TRANSFAC + 45985034 45985041 1.0E-05 TGAGTCAT 8 V_SOX15_03_M02799 TRANSFAC - 45984718 45984734 6.0E-06 AGGGGAACAATAAGGAG 17 V_MTF1_06_M02882 TRANSFAC + 45989812 45989825 2.0E-06 AGCTAAGAAATAAA 14 V_MYOD_Q6_01_M00929 TRANSFAC - 45980463 45980480 6.0E-06 AGGAAGCAGCTGTAGTAG 18 V_OCT2_01_M01368 TRANSFAC + 45989743 45989758 7.0E-06 ACGTATGTAAATGTAT 16 V_DR1_Q3_M00762 TRANSFAC - 45983909 45983921 2.0E-06 AGGGCAAATGTCA 13 V_FOXL1_02_M02857 TRANSFAC - 45985038 45985053 2.0E-06 AGAGTAAAACAAATGA 16 V_FOXL1_04_M02753 TRANSFAC - 45989076 45989092 6.0E-06 AAGCTATAAACAAAGCC 17 V_FOXJ3_06_M02855 TRANSFAC - 45985038 45985054 2.0E-06 AAGAGTAAAACAAATGA 17 NR1H2_RXRA_MA0115.1 JASPAR - 45983907 45983923 2.0E-06 TAAGGGCAAATGTCAAG 17 V_PARP_Q3_M01211 TRANSFAC + 45989815 45989824 8.0E-06 TAAGAAATAA 10 V_FRA1_Q5_M01267 TRANSFAC - 45982361 45982368 1.0E-05 TGAGTCAT 8 V_FRA1_Q5_M01267 TRANSFAC + 45985034 45985041 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 45980540 45980551 2.0E-06 AGGGGAGGAGGA 12 V_FOXO3_01_M00477 TRANSFAC + 45981053 45981066 3.0E-06 TGCTTGTTTAGAAA 14 V_STAT1STAT1_Q3_M01212 TRANSFAC - 45984048 45984060 8.0E-06 CTTTCCCAGAAGC 13 V_PLZF_02_M01075 TRANSFAC + 45989698 45989726 3.0E-06 GGCTTTGCATTTTAAAAATGAAATTTTCC 29 V_BBX_03_M02739 TRANSFAC + 45983598 45983612 9.0E-06 GAATTCATTCAAAAA 15 V_OCT1_06_M00162 TRANSFAC + 45989711 45989724 7.0E-06 AAAAATGAAATTTT 14 V_OCT1_06_M00162 TRANSFAC - 45989712 45989725 4.0E-06 GAAAATTTCATTTT 14 V_IRX2_01_M01405 TRANSFAC + 45989153 45989169 9.0E-06 CATGAACATGTACTGTT 17 V_IRF1_Q6_01_M01881 TRANSFAC - 45989710 45989723 1.0E-06 AAATTTCATTTTTA 14 V_DMRT2_01_M01147 TRANSFAC - 45980339 45980354 6.0E-06 GTAAGAAATACATTTT 16 V_NFKAPPAB_01_M00054 TRANSFAC - 45981092 45981101 8.0E-06 GGGATTTTCC 10 V_SIX6_08_M02897 TRANSFAC - 45989751 45989767 2.0E-06 TGTGGGTATATACATTT 17 V_SIX6_08_M02897 TRANSFAC + 45989752 45989768 6.0E-06 AATGTATATACCCACAC 17 V_YY1_01_M00059 TRANSFAC - 45989707 45989723 6.0E-06 AAATTTCATTTTTAAAA 17 V_SOX1_03_M02802 TRANSFAC + 45983599 45983614 6.0E-06 AATTCATTCAAAAAGG 16 V_FOXO1_01_M00473 TRANSFAC - 45989079 45989088 2.0E-06 TATAAACAAA 10 V_HOXC10_01_M01361 TRANSFAC + 45989930 45989945 0.0E+00 ATAAGTCGTAAACTTT 16 V_PIT1_Q6_M00802 TRANSFAC - 45989704 45989721 8.0E-06 ATTTCATTTTTAAAATGC 18 V_MAFK_04_M02880 TRANSFAC + 45989628 45989642 6.0E-06 GAAAAATGTGCAAAA 15 V_ZFP128_04_M02932 TRANSFAC + 45989748 45989761 9.0E-06 TGTAAATGTATATA 14 V_ZFP128_04_M02932 TRANSFAC - 45989748 45989761 9.0E-06 TATATACATTTACA 14 V_HOXD10_01_M01375 TRANSFAC - 45989212 45989228 4.0E-06 AAGTCCTTAAAAATTTT 17 V_TCF11MAFG_01_M00284 TRANSFAC + 45988516 45988537 7.0E-06 TTACCATGACGAGGCAATTTCC 22 V_IRXB3_01_M01377 TRANSFAC + 45989153 45989169 2.0E-06 CATGAACATGTACTGTT 17 V_STAT1_Q6_M01823 TRANSFAC + 45984050 45984059 2.0E-06 TTCTGGGAAA 10 V_CEBPG_Q6_01_M01869 TRANSFAC - 45989719 45989730 6.0E-06 CATTGGAAAATT 12 V_AR_Q6_M00962 TRANSFAC + 45980654 45980662 6.0E-06 TGAGCACAT 9 V_SMAD_Q6_M00792 TRANSFAC + 45987967 45987975 3.0E-06 AGACACCAT 9 V_FOXK1_03_M02752 TRANSFAC - 45989076 45989092 6.0E-06 AAGCTATAAACAAAGCC 17 V_PAX4_04_M00380 TRANSFAC + 45989816 45989845 9.0E-06 AAGAAATAAAACTGTTAAAGTCTCCAAACT 30 V_HOXC9_01_M01416 TRANSFAC + 45989930 45989945 9.0E-06 ATAAGTCGTAAACTTT 16 V_OCT4_01_M01125 TRANSFAC + 45989096 45989110 4.0E-06 CATTCTCATGGAGAA 15 V_OCT4_01_M01125 TRANSFAC - 45989700 45989714 1.0E-06 TTTTAAAATGCAAAG 15 V_PPARG_01_M00512 TRANSFAC - 45983905 45983925 9.0E-06 CCTAAGGGCAAATGTCAAGCA 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.