Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CENPF Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 1063 centromere protein F, 350/400kDa chr1 + 214771531 - 214777031 214776531 Transcription Factor Binding Sites   Download all TFBS in the CENPF promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 4.0E-06 TTAATTAA 8 Uncx_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 4.0E-06 TTAATTAA 8 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 214776080 214776088 9.0E-06 TTAATAAAA 9 SOX10_HMG_full_dimeric_16_1 SELEX + 214778156 214778171 6.0E-06 TACAAGATGCTGTGTT 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 214776175 214776192 9.0E-06 TAAATTTACGTTTAATTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 214776176 214776193 3.0E-06 TTAATTAAACGTAAATTT 18 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 4.0E-06 TTAATTAA 8 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 4.0E-06 TTAATTAA 8 Myc_MA0147.1 JASPAR + 214776343 214776352 7.0E-06 AGCACGTGGT 10 ISX_homeodomain_full_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 ALX3_homeodomain_full_monomeric_10_1 SELEX + 214776185 214776194 6.0E-06 TTTAATTAAG 10 ALX3_homeodomain_full_monomeric_10_1 SELEX - 214776185 214776194 4.0E-06 CTTAATTAAA 10 SOX9_HMG_full_dimeric_16_1 SELEX + 214778156 214778171 8.0E-06 TACAAGATGCTGTGTT 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 214776374 214776390 1.0E-06 AAAAAGAACAGTAAACT 17 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 214776187 214776201 7.0E-06 TAATTAAGTAGATTG 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 214776187 214776201 1.0E-05 CAATCTACTTAATTA 15 SOX8_HMG_DBD_dimeric_16_1 SELEX + 214778156 214778171 1.0E-06 TACAAGATGCTGTGTT 16 Shox2_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 Shox2_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 MAX_bHLH_DBD_dimeric_10_1 SELEX - 214776343 214776352 1.0E-06 ACCACGTGCT 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 214776185 214776194 4.0E-06 TTTAATTAAG 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX - 214776185 214776194 3.0E-06 CTTAATTAAA 10 ZNF232_C2H2_full_monomeric_19_1 SELEX - 214776174 214776192 2.0E-06 TAATTAAACGTAAATTTAG 19 NKX6-2_homeodomain_full_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 NKX6-2_homeodomain_full_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 Foxq1_MA0040.1 JASPAR + 214777996 214778006 7.0E-06 AATTGTTTAGG 11 MNT_bHLH_DBD_dimeric_10_1 SELEX - 214776343 214776352 2.0E-06 ACCACGTGCT 10 SHOX_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 SHOX_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 MIXL1_homeodomain_full_monomeric_10_1 SELEX + 214776185 214776194 3.0E-06 TTTAATTAAG 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 214776185 214776194 2.0E-06 CTTAATTAAA 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 214776886 214776901 8.0E-06 TCGGGTTCAAACTGGT 16 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX - 214776886 214776901 7.0E-06 ACCAGTTTGAACCCGA 16 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 214776185 214776194 4.0E-06 CTTAATTAAA 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 214776176 214776193 6.0E-06 TTAATTAAACGTAAATTT 18 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 214776262 214776276 9.0E-06 GACCACGCCTTCCTA 15 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 214776041 214776057 8.0E-06 CAAATTACTGTACTTAG 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 214776041 214776057 7.0E-06 CTAAGTACAGTAATTTG 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 214777998 214778014 8.0E-06 TTGTTTAGGGCAATTAC 17 GSX1_homeodomain_DBD_monomeric_10_1 SELEX - 214776185 214776194 4.0E-06 CTTAATTAAA 10 IRF3_IRF_full_trimeric_21_1 SELEX - 214776029 214776049 7.0E-06 AGTAATTTGAAATTGAATCTA 21 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 214776176 214776193 4.0E-06 TTAATTAAACGTAAATTT 18 RREB1_MA0073.1 JASPAR + 214776361 214776380 8.0E-06 CCCCGCAACAACAAAAAAGA 20 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 4.0E-06 TTAATTAA 8 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 4.0E-06 TTAATTAA 8 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 214776186 214776193 9.0E-06 TTAATTAA 8 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 214776186 214776193 9.0E-06 TTAATTAA 8 V_CEBPG_Q6_M00622 TRANSFAC - 214776075 214776087 8.0E-06 TTTATTAAAAAGT 13 V_TST1_02_M01316 TRANSFAC - 214776183 214776199 4.0E-06 ATCTACTTAATTAAACG 17 V_TST1_02_M01316 TRANSFAC + 214776184 214776200 3.0E-06 GTTTAATTAAGTAGATT 17 V_DBX1_01_M01483 TRANSFAC + 214776073 214776089 2.0E-06 TAACTTTTTAATAAAAT 17 V_DBX1_01_M01483 TRANSFAC - 214776074 214776090 5.0E-06 CATTTTATTAAAAAGTT 17 V_DLX3_01_M01400 TRANSFAC - 214778003 214778019 6.0E-06 CAACTGTAATTGCCCTA 17 V_HMGIY_Q3_M01010 TRANSFAC + 214776037 214776051 1.0E-05 ATTTCAAATTACTGT 15 V_BCL6_01_M01183 TRANSFAC - 214776108 214776123 3.0E-06 TTCTTAACAATTCTTT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 214776069 214776080 3.0E-06 AAAAGTTAACAG 12 V_AR_Q6_01_M01996 TRANSFAC - 214776377 214776391 8.0E-06 GAGTTTACTGTTCTT 15 V_SOX5_01_M00042 TRANSFAC - 214776111 214776120 9.0E-06 TTAACAATTC 10 V_SP100_03_M02809 TRANSFAC - 214776177 214776190 1.0E-06 ATTAAACGTAAATT 14 V_SP100_03_M02809 TRANSFAC + 214776298 214776311 7.0E-06 CTTTTGCGGAAATA 14 V_ISL2_01_M01328 TRANSFAC - 214776187 214776202 6.0E-06 CCAATCTACTTAATTA 16 V_ARNT_01_M00236 TRANSFAC + 214776340 214776355 3.0E-06 AAAAGCACGTGGTCTC 16 V_SOX11_04_M02899 TRANSFAC + 214776110 214776123 0.0E+00 AGAATTGTTAAGAA 14 V_SOX11_04_M02899 TRANSFAC + 214777994 214778007 7.0E-06 TGAATTGTTTAGGG 14 V_HOXC4_01_M01369 TRANSFAC - 214776181 214776197 2.0E-06 CTACTTAATTAAACGTA 17 V_HOXC4_01_M01369 TRANSFAC + 214776182 214776198 4.0E-06 ACGTTTAATTAAGTAGA 17 V_MAF_Q6_M00648 TRANSFAC + 214776515 214776530 1.0E-06 TGGAGGTAAGTTTGGT 16 V_LHX3A_01_M00510 TRANSFAC + 214776184 214776193 6.0E-06 GTTTAATTAA 10 V_LHX3A_01_M00510 TRANSFAC - 214776186 214776195 3.0E-06 ACTTAATTAA 10 V_HOXD13_01_M01404 TRANSFAC + 214776077 214776092 2.0E-06 TTTTTAATAAAATGAG 16 V_CMYC_02_M01154 TRANSFAC + 214776342 214776353 7.0E-06 AAGCACGTGGTC 12 V_CMYC_02_M01154 TRANSFAC - 214776342 214776353 1.0E-06 GACCACGTGCTT 12 V_PAX6_02_M01391 TRANSFAC + 214776183 214776198 9.0E-06 CGTTTAATTAAGTAGA 16 V_PAX7_01_M01339 TRANSFAC - 214776181 214776197 3.0E-06 CTACTTAATTAAACGTA 17 V_PAX7_01_M01339 TRANSFAC + 214776182 214776198 6.0E-06 ACGTTTAATTAAGTAGA 17 V_HELIOSA_01_M01003 TRANSFAC + 214778133 214778143 2.0E-06 TTTTGGGATAA 11 V_CART1_03_M01453 TRANSFAC - 214776181 214776197 2.0E-06 CTACTTAATTAAACGTA 17 V_CART1_03_M01453 TRANSFAC + 214776182 214776198 4.0E-06 ACGTTTAATTAAGTAGA 17 V_AR_03_M00956 TRANSFAC - 214776372 214776398 7.0E-06 TGCGCCGGAGTTTACTGTTCTTTTTTG 27 V_BARBIE_01_M00238 TRANSFAC + 214776337 214776351 9.0E-06 AGCAAAAGCACGTGG 15 V_MYC_01_M02250 TRANSFAC + 214776343 214776352 7.0E-06 AGCACGTGGT 10 V_PITX1_Q6_M01826 TRANSFAC - 214776905 214776915 0.0E+00 GACACTAATCC 11 V_TST1_01_M00133 TRANSFAC + 214778005 214778019 3.0E-06 GGGCAATTACAGTTG 15 V_SOX13_03_M02797 TRANSFAC - 214776108 214776123 6.0E-06 TTCTTAACAATTCTTT 16 V_HOXA6_01_M01392 TRANSFAC - 214778002 214778017 6.0E-06 ACTGTAATTGCCCTAA 16 V_PR_Q2_M00960 TRANSFAC + 214776375 214776384 9.0E-06 AAAAGAACAG 10 V_LMX1_01_M01409 TRANSFAC - 214776075 214776091 3.0E-06 TCATTTTATTAAAAAGT 17 V_LMX1_01_M01409 TRANSFAC - 214776181 214776197 5.0E-06 CTACTTAATTAAACGTA 17 V_LMX1_01_M01409 TRANSFAC + 214776182 214776198 6.0E-06 ACGTTTAATTAAGTAGA 17 V_ZFP105_03_M02827 TRANSFAC + 214776367 214776381 1.0E-06 AACAACAAAAAAGAA 15 V_ZFP105_03_M02827 TRANSFAC + 214776370 214776384 7.0E-06 AACAAAAAAGAACAG 15 V_MYCMAX_01_M00118 TRANSFAC + 214776341 214776354 1.0E-06 AAAGCACGTGGTCT 14 V_MYCMAX_01_M00118 TRANSFAC - 214776341 214776354 1.0E-06 AGACCACGTGCTTT 14 V_HNF1_Q6_M00790 TRANSFAC + 214776070 214776087 8.0E-06 TGTTAACTTTTTAATAAA 18 V_CMYC_01_M01145 TRANSFAC + 214776342 214776353 1.0E-06 AAGCACGTGGTC 12 V_CMYC_01_M01145 TRANSFAC - 214776342 214776353 2.0E-06 GACCACGTGCTT 12 V_NKX31_02_M02782 TRANSFAC - 214776186 214776202 7.0E-06 CCAATCTACTTAATTAA 17 V_NKX61_01_M00424 TRANSFAC + 214776077 214776089 6.0E-06 TTTTTAATAAAAT 13 V_HOXB6_01_M01460 TRANSFAC + 214778002 214778017 4.0E-06 TTAGGGCAATTACAGT 16 MYC_MAX_MA0059.1 JASPAR + 214776342 214776352 0.0E+00 AAGCACGTGGT 11 V_PAX4_05_M01385 TRANSFAC + 214776182 214776198 6.0E-06 ACGTTTAATTAAGTAGA 17 V_SOX18_03_M02801 TRANSFAC + 214776109 214776124 6.0E-06 AAGAATTGTTAAGAAC 16 V_OCT1_08_M01354 TRANSFAC + 214776181 214776196 5.0E-06 TACGTTTAATTAAGTA 16 V_UNCX4.1_01_M01458 TRANSFAC + 214776181 214776197 6.0E-06 TACGTTTAATTAAGTAG 17 V_UNCX4.1_01_M01458 TRANSFAC - 214776182 214776198 3.0E-06 TCTACTTAATTAAACGT 17 V_SP1SP3_Q4_M01219 TRANSFAC + 214776811 214776821 1.0E-06 CCGCCCCCTCC 11 V_PIT1_01_M01465 TRANSFAC - 214776183 214776199 8.0E-06 ATCTACTTAATTAAACG 17 V_PIT1_01_M01465 TRANSFAC + 214776184 214776200 2.0E-06 GTTTAATTAAGTAGATT 17 V_OTP_01_M01323 TRANSFAC + 214776181 214776197 3.0E-06 TACGTTTAATTAAGTAG 17 V_OTP_01_M01323 TRANSFAC - 214776182 214776198 8.0E-06 TCTACTTAATTAAACGT 17 V_NCX_02_M01420 TRANSFAC + 214776073 214776089 1.0E-06 TAACTTTTTAATAAAAT 17 V_NCX_02_M01420 TRANSFAC - 214776074 214776090 4.0E-06 CATTTTATTAAAAAGTT 17 V_NCX_02_M01420 TRANSFAC - 214776180 214776196 8.0E-06 TACTTAATTAAACGTAA 17 V_ARID3A_04_M02735 TRANSFAC - 214776074 214776090 9.0E-06 CATTTTATTAAAAAGTT 17 V_ARID3A_04_M02735 TRANSFAC - 214776075 214776091 5.0E-06 TCATTTTATTAAAAAGT 17 V_ARID3A_04_M02735 TRANSFAC + 214776076 214776092 5.0E-06 CTTTTTAATAAAATGAG 17 V_ARID3A_04_M02735 TRANSFAC - 214776181 214776197 1.0E-06 CTACTTAATTAAACGTA 17 V_PROP1_02_M01320 TRANSFAC - 214776181 214776197 6.0E-06 CTACTTAATTAAACGTA 17 V_PROP1_02_M01320 TRANSFAC + 214776182 214776198 3.0E-06 ACGTTTAATTAAGTAGA 17 V_OCT4_02_M01124 TRANSFAC + 214776032 214776046 5.0E-06 ATTCAATTTCAAATT 15 V_LHX3b_01_M01971 TRANSFAC + 214776184 214776193 7.0E-06 GTTTAATTAA 10 V_LHX3b_01_M01971 TRANSFAC - 214776186 214776195 1.0E-05 ACTTAATTAA 10 V_SOX11_03_M02795 TRANSFAC - 214778091 214778107 9.0E-06 CAACCAACAAAGGACAA 17 V_NKX63_01_M01470 TRANSFAC + 214776181 214776197 7.0E-06 TACGTTTAATTAAGTAG 17 V_LIM1_01_M01418 TRANSFAC + 214776182 214776198 5.0E-06 ACGTTTAATTAAGTAGA 17 V_FOXO1_Q5_M01216 TRANSFAC - 214776417 214776425 8.0E-06 AAAAACAAG 9 V_NKX32_02_M01482 TRANSFAC - 214776186 214776202 8.0E-06 CCAATCTACTTAATTAA 17 V_IRF7_01_M00453 TRANSFAC - 214776033 214776050 4.0E-06 CAGTAATTTGAAATTGAA 18 V_HOXB4_01_M01424 TRANSFAC - 214776181 214776197 7.0E-06 CTACTTAATTAAACGTA 17 V_ZFP691_04_M02937 TRANSFAC + 214778113 214778129 0.0E+00 CATGTGACTCCTTTCAG 17 V_GR_Q6_02_M01836 TRANSFAC - 214776376 214776388 9.0E-06 TTTACTGTTCTTT 13 V_SHOX2_01_M01415 TRANSFAC - 214776181 214776197 1.0E-06 CTACTTAATTAAACGTA 17 V_SHOX2_01_M01415 TRANSFAC + 214776182 214776198 9.0E-06 ACGTTTAATTAAGTAGA 17 V_BRN4_01_M01473 TRANSFAC - 214776183 214776199 6.0E-06 ATCTACTTAATTAAACG 17 V_BRN4_01_M01473 TRANSFAC + 214776184 214776200 1.0E-06 GTTTAATTAAGTAGATT 17 V_MAX_01_M00119 TRANSFAC + 214776341 214776354 1.0E-06 AAAGCACGTGGTCT 14 V_MAX_01_M00119 TRANSFAC - 214776341 214776354 1.0E-06 AGACCACGTGCTTT 14 V_TCF7_04_M02921 TRANSFAC - 214776074 214776088 4.0E-06 TTTTATTAAAAAGTT 15 V_ZFP206_01_M01742 TRANSFAC + 214776467 214776477 1.0E-06 TGCGCAGGCGC 11 V_LMX1B_01_M01363 TRANSFAC + 214776075 214776091 6.0E-06 ACTTTTTAATAAAATGA 17 V_LMX1B_01_M01363 TRANSFAC + 214776181 214776197 4.0E-06 TACGTTTAATTAAGTAG 17 V_LMX1B_01_M01363 TRANSFAC - 214776182 214776198 9.0E-06 TCTACTTAATTAAACGT 17 V_MECP2_02_M01299 TRANSFAC - 214776385 214776394 7.0E-06 CCGGAGTTTA 10 V_MSX1_01_M00394 TRANSFAC - 214778008 214778016 7.0E-06 CTGTAATTG 9 V_MYB_Q3_M00773 TRANSFAC + 214778083 214778093 7.0E-06 AGGGTCAGTTG 11 V_SOX8_03_M02808 TRANSFAC + 214776107 214776123 2.0E-06 CAAAGAATTGTTAAGAA 17 V_HIF2A_01_M01249 TRANSFAC + 214776202 214776211 9.0E-06 GTACGTGCAG 10 V_SATB1_01_M01232 TRANSFAC - 214776077 214776088 7.0E-06 TTTTATTAAAAA 12 V_MOX1_01_M01443 TRANSFAC - 214778002 214778017 7.0E-06 ACTGTAATTGCCCTAA 16 V_MEF2_01_M00006 TRANSFAC - 214776414 214776429 3.0E-06 TTTTAAAAACAAGCCC 16 V_HOXD3_01_M01338 TRANSFAC + 214778002 214778017 9.0E-06 TTAGGGCAATTACAGT 16 V_FOXO4_01_M00472 TRANSFAC - 214776415 214776425 4.0E-06 AAAAACAAGCC 11 V_LHX5_01_M01353 TRANSFAC - 214776181 214776197 4.0E-06 CTACTTAATTAAACGTA 17 V_SOX5_07_M02909 TRANSFAC + 214776107 214776123 0.0E+00 CAAAGAATTGTTAAGAA 17 V_HOXD10_01_M01375 TRANSFAC - 214776073 214776089 4.0E-06 ATTTTATTAAAAAGTTA 17 V_HOXD10_01_M01375 TRANSFAC + 214776077 214776093 5.0E-06 TTTTTAATAAAATGAGG 17 V_RNF96_01_M01199 TRANSFAC - 214776566 214776575 7.0E-06 GCCCGCAGCC 10 V_GLIS2_04_M02863 TRANSFAC + 214776076 214776089 7.0E-06 CTTTTTAATAAAAT 14 V_GLIS2_04_M02863 TRANSFAC - 214776077 214776090 2.0E-06 CATTTTATTAAAAA 14 V_HOXC8_01_M01321 TRANSFAC + 214778002 214778017 8.0E-06 TTAGGGCAATTACAGT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.