Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SEC23B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10483 Sec23 homolog B (S. cerevisiae) chr20 + 18483187 - 18489106 18488606 Transcription Factor Binding Sites   Download all TFBS in the SEC23B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 18487471 18487483 7.0E-06 GCAAACATGAACA 13 NF-kappaB_MA0061.1 JASPAR + 18488234 18488243 6.0E-06 GGGACTTCCC 10 TBX1_TBX_DBD_dimeric_20_2 SELEX + 18487621 18487640 1.0E-06 TTCTCACTTGAAAGTGGGAG 20 EN2_homeodomain_full_monomeric_10_1 SELEX + 18485209 18485218 1.0E-05 ACCAATTAGG 10 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 18487905 18487921 2.0E-06 ATAAATAATTGAGAACT 17 En1_MA0027.1 JASPAR + 18487851 18487861 8.0E-06 AAGTTATGTTC 11 Tp73_p53l_DBD_dimeric_18_1 SELEX + 18487615 18487632 6.0E-06 TACATGTTCTCACTTGAA 18 Tp73_p53l_DBD_dimeric_18_1 SELEX - 18487615 18487632 6.0E-06 TTCAAGTGAGAACATGTA 18 NFYA_MA0060.1 JASPAR - 18488481 18488496 5.0E-06 ACTGGCCAATCAAAGA 16 Pax4_MA0068.1 JASPAR - 18487890 18487919 7.0E-06 AAATAATTGAGAACTGTAATATTCAACCAT 30 SPIB_ETS_DBD_monomeric_14_1 SELEX + 18492384 18492397 1.0E-05 AATTTGAGGAAGTG 14 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 18487750 18487768 1.0E-06 TATCTGGGTGACCAGCTCA 19 POU4F3_POU_DBD_monomeric_16_1 SELEX - 18487906 18487921 8.0E-06 ATAAATAATTGAGAAC 16 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 18487908 18487922 9.0E-06 GATAAATAATTGAGA 15 ZBED1_znf_BED_DBD_dimeric_13_1 SELEX + 18491478 18491490 4.0E-06 CTATGGCGACATA 13 SPDEF_ETS_full_putative-multimer_15_1 SELEX - 18488756 18488770 2.0E-06 GGACTCCCGGATCAT 15 NFATC1_NFAT_full_dimeric_20_1 SELEX + 18487845 18487864 3.0E-06 AAAAGAAAGTTATGTTCCAT 20 NFATC1_NFAT_full_dimeric_20_1 SELEX - 18487846 18487865 7.0E-06 CATGGAACATAACTTTCTTT 20 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 18485283 18485299 5.0E-06 TGGTTTACAGGAACTCC 17 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 18487487 18487501 0.0E+00 TACACACGCTGACAA 15 POU3F1_POU_DBD_monomeric_12_2 SELEX - 18487910 18487921 4.0E-06 ATAAATAATTGA 12 ID4_bHLH_DBD_dimeric_10_1 SELEX + 18488401 18488410 1.0E-06 TACACCTGTC 10 MAX_MA0058.1 JASPAR + 18485295 18485304 1.0E-06 AACCACGTGA 10 Tp53_p53l_DBD_dimeric_17_1 SELEX - 18487474 18487490 2.0E-06 ACAAGTGGCAAACATGA 17 NR3C1_MA0113.1 JASPAR + 18487847 18487864 1.0E-06 AAGAAAGTTATGTTCCAT 18 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 18488355 18488365 1.0E-06 TTTCCCCACCC 11 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 18488187 18488204 3.0E-06 AACGATGACGTATGCTCG 18 RUNX1_MA0002.2 JASPAR - 18488051 18488061 3.0E-06 CTCTGTGGTTA 11 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 18488354 18488365 8.0E-06 TTTCCCCACCCC 12 Nobox_MA0125.1 JASPAR - 18485209 18485216 7.0E-06 TAATTGGT 8 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 18487471 18487483 4.0E-06 GCAAACATGAACA 13 TP63_p53l_DBD_dimeric_18_1 SELEX - 18487615 18487632 5.0E-06 TTCAAGTGAGAACATGTA 18 POU4F1_POU_DBD_monomeric_14_1 SELEX - 18487908 18487921 7.0E-06 ATAAATAATTGAGA 14 POU4F1_POU_DBD_monomeric_14_1 SELEX + 18487909 18487922 9.0E-06 CTCAATTATTTATC 14 HNF1A_MA0046.1 JASPAR + 18487834 18487847 9.0E-06 AATTATTTTTTAAA 14 V_HNF3B_01_M00131 TRANSFAC + 18487832 18487846 5.0E-06 GGAATTATTTTTTAA 15 V_NFKB_C_M00208 TRANSFAC + 18488233 18488244 2.0E-06 CGGGACTTCCCA 12 V_SPI1_01_M01203 TRANSFAC + 18492384 18492400 6.0E-06 AATTTGAGGAAGTGAAA 17 V_DBX1_01_M01483 TRANSFAC + 18487833 18487849 3.0E-06 GAATTATTTTTTAAAAG 17 V_DBX1_01_M01483 TRANSFAC + 18487836 18487852 4.0E-06 TTATTTTTTAAAAGAAA 17 V_NFKB_Q6_01_M00774 TRANSFAC - 18488233 18488248 3.0E-06 TCAGTGGGAAGTCCCG 16 V_DEC2_Q2_M01843 TRANSFAC - 18485297 18485306 3.0E-06 GTTCACGTGG 10 V_MYOD_Q6_M00184 TRANSFAC + 18488401 18488410 9.0E-06 TACACCTGTC 10 V_STAT3STAT3_Q3_M01220 TRANSFAC - 18485283 18485296 8.0E-06 TTTACAGGAACTCC 14 V_FOXD3_01_M00130 TRANSFAC + 18487912 18487923 9.0E-06 AATTATTTATCT 12 V_ATF4_Q6_M01864 TRANSFAC + 18488193 18488201 6.0E-06 TACGTCATC 9 V_TCF4_Q5_01_M02033 TRANSFAC - 18488479 18488488 5.0E-06 ATCAAAGAGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 18488111 18488120 4.0E-06 GGGGCGGGGC 10 V_CREB_Q4_01_M00917 TRANSFAC - 18488192 18488202 9.0E-06 CGATGACGTAT 11 V_IRF_Q6_01_M00972 TRANSFAC + 18488338 18488348 6.0E-06 GAAACAGAAAC 11 V_IRF_Q6_01_M00972 TRANSFAC + 18492391 18492401 5.0E-06 GGAAGTGAAAT 11 V_GBX2_01_M01382 TRANSFAC + 18485206 18485222 7.0E-06 GACACCAATTAGGAACT 17 V_NKX25_Q6_M02108 TRANSFAC + 18487623 18487633 0.0E+00 CTCACTTGAAA 11 V_CEBP_01_M00159 TRANSFAC - 18488048 18488060 7.0E-06 TCTGTGGTTAAGT 13 V_GATA_C_M00203 TRANSFAC - 18487913 18487923 7.0E-06 AGATAAATAAT 11 V_PU1_Q4_M01172 TRANSFAC - 18492385 18492403 1.0E-06 ACATTTCACTTCCTCAAAT 19 V_NFY_Q6_01_M00775 TRANSFAC - 18488485 18488497 5.0E-06 CACTGGCCAATCA 13 V_NR3C1_01_M02219 TRANSFAC + 18487847 18487864 1.0E-06 AAGAAAGTTATGTTCCAT 18 V_PAX6_02_M01391 TRANSFAC + 18487907 18487922 7.0E-06 TTCTCAATTATTTATC 16 V_NKX62_Q2_M00489 TRANSFAC - 18487913 18487924 1.0E-05 GAGATAAATAAT 12 V_TAL1_GATA1_01_M02243 TRANSFAC - 18487917 18487934 3.0E-06 CTTCTACATGGAGATAAA 18 V_NRSE_B_M00325 TRANSFAC + 18487745 18487765 7.0E-06 CTCAGTATCTGGGTGACCAGC 21 V_NFY_C_M00209 TRANSFAC + 18488483 18488496 1.0E-06 TTTGATTGGCCAGT 14 V_SRF_C_M00215 TRANSFAC - 18487880 18487894 1.0E-05 ACCATTTTAGGAGAG 15 V_ETS_Q4_M00771 TRANSFAC - 18492389 18492400 8.0E-06 TTTCACTTCCTC 12 V_ELF4_04_M02850 TRANSFAC - 18487832 18487848 2.0E-06 TTTTAAAAAATAATTCC 17 V_ELF4_04_M02850 TRANSFAC - 18487833 18487849 0.0E+00 CTTTTAAAAAATAATTC 17 V_ELF4_04_M02850 TRANSFAC - 18487834 18487850 4.0E-06 TCTTTTAAAAAATAATT 17 V_ELF4_04_M02850 TRANSFAC - 18487836 18487852 5.0E-06 TTTCTTTTAAAAAATAA 17 V_GC_01_M00255 TRANSFAC - 18488109 18488122 1.0E-06 AAGGGGCGGGGCGG 14 V_SPI1_03_M02078 TRANSFAC + 18492388 18492397 4.0E-06 TGAGGAAGTG 10 V_DBX2_01_M01360 TRANSFAC - 18487907 18487922 6.0E-06 GATAAATAATTGAGAA 16 V_RUNX1_01_M02257 TRANSFAC - 18488051 18488061 3.0E-06 CTCTGTGGTTA 11 V_IRF5_04_M02873 TRANSFAC - 18488376 18488390 2.0E-06 CAAAACGAGAGTTCC 15 V_AMEF2_Q6_M00403 TRANSFAC - 18487832 18487849 9.0E-06 CTTTTAAAAAATAATTCC 18 V_SP1_Q6_M00196 TRANSFAC - 18488110 18488122 1.0E-06 AAGGGGCGGGGCG 13 V_OCT1_05_M00161 TRANSFAC - 18488124 18488137 8.0E-06 GGCATTAGCATGCG 14 V_SOX_Q6_M01014 TRANSFAC + 18488480 18488492 9.0E-06 CTCTTTGATTGGC 13 V_HMX1_01_M00433 TRANSFAC + 18488079 18488088 2.0E-06 CAAGTGCGTA 10 V_NKX25_Q5_M01043 TRANSFAC + 18487622 18487631 3.0E-06 TCTCACTTGA 10 V_HOX13_01_M00023 TRANSFAC + 18487900 18487929 3.0E-06 ATTACAGTTCTCAATTATTTATCTCCATGT 30 Tal1_Gata1_MA0140.1 JASPAR - 18487917 18487934 3.0E-06 CTTCTACATGGAGATAAA 18 V_PIT1_01_M01465 TRANSFAC + 18487908 18487924 7.0E-06 TCTCAATTATTTATCTC 17 V_NCX_02_M01420 TRANSFAC + 18487836 18487852 6.0E-06 TTATTTTTTAAAAGAAA 17 V_NCX_02_M01420 TRANSFAC + 18487907 18487923 9.0E-06 TTCTCAATTATTTATCT 17 V_STAT4_Q5_M02117 TRANSFAC + 18487843 18487852 2.0E-06 TTAAAAGAAA 10 V_TBP_06_M02814 TRANSFAC - 18487836 18487851 5.0E-06 TTCTTTTAAAAAATAA 16 V_IRX3_01_M01318 TRANSFAC - 18487610 18487626 7.0E-06 TGAGAACATGTATTTGG 17 V_OCT4_02_M01124 TRANSFAC - 18488333 18488347 8.0E-06 TTTCTGTTTCAGAAA 15 V_IRX5_01_M01472 TRANSFAC - 18487610 18487626 9.0E-06 TGAGAACATGTATTTGG 17 V_BCL6B_04_M02844 TRANSFAC - 18488349 18488364 1.0E-06 TTCCCCACCCCTAAAC 16 V_SP4_Q5_M01273 TRANSFAC + 18488111 18488121 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC + 18492385 18492396 4.0E-06 ATTTGAGGAAGT 12 V_IRX3_02_M01485 TRANSFAC - 18487610 18487626 7.0E-06 TGAGAACATGTATTTGG 17 V_CAAT_01_M00254 TRANSFAC - 18488485 18488496 1.0E-06 ACTGGCCAATCA 12 V_BRN4_01_M01473 TRANSFAC + 18487908 18487924 4.0E-06 TCTCAATTATTTATCTC 17 V_HNF1_01_M00132 TRANSFAC + 18487834 18487848 3.0E-06 AATTATTTTTTAAAA 15 V_AREB6_02_M00413 TRANSFAC + 18488400 18488411 7.0E-06 ATACACCTGTCT 12 V_PARP_Q3_M01211 TRANSFAC - 18487865 18487874 3.0E-06 TTAGAAATAC 10 V_NFY_01_M00287 TRANSFAC - 18488481 18488496 3.0E-06 ACTGGCCAATCAAAGA 16 V_SPIC_02_M02077 TRANSFAC + 18492388 18492397 5.0E-06 TGAGGAAGTG 10 V_SOX8_03_M02808 TRANSFAC + 18487829 18487845 1.0E-05 GTTGGAATTATTTTTTA 17 V_NFKAPPAB_01_M00054 TRANSFAC + 18488234 18488243 7.0E-06 GGGACTTCCC 10 V_HB9_01_M01349 TRANSFAC - 18485205 18485220 8.0E-06 TTCCTAATTGGTGTCG 16 V_SRF_06_M02916 TRANSFAC - 18487833 18487849 0.0E+00 CTTTTAAAAAATAATTC 17 V_FOXJ2_01_M00422 TRANSFAC - 18487910 18487927 5.0E-06 ATGGAGATAAATAATTGA 18 V_PIT1_Q6_M00802 TRANSFAC + 18488041 18488058 1.0E-06 ACTTCAAACTTAACCACA 18 V_MEF2_01_M00006 TRANSFAC - 18487832 18487847 2.0E-06 TTTAAAAAATAATTCC 16 V_SP1_Q2_01_M00933 TRANSFAC + 18488112 18488121 7.0E-06 CCCCGCCCCT 10 V_GATA1_02_M00126 TRANSFAC - 18492368 18492381 7.0E-06 TTCAAGATAATGCT 14 V_NFYA_Q5_M02106 TRANSFAC - 18488481 18488494 6.0E-06 TGGCCAATCAAAGA 14 V_SP1_Q4_01_M00932 TRANSFAC - 18488110 18488122 1.0E-06 AAGGGGCGGGGCG 13 V_HNF1A_01_M02162 TRANSFAC + 18487834 18487847 9.0E-06 AATTATTTTTTAAA 14 V_GLIS2_04_M02863 TRANSFAC + 18487835 18487848 5.0E-06 ATTATTTTTTAAAA 14 V_SPIB_03_M02076 TRANSFAC + 18492388 18492397 5.0E-06 TGAGGAAGTG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.