Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HOXB13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 10481 homeobox B13 chr17 - 46805611 - 46811111 46806111 HOXB13_homeodomain_DBD_monomeric_11_1 HOXB13_homeodomain_DBD_monomeric_10_1 V_HOXB13_01_M01467 Transcription Factor Binding Sites   Download all TFBS in the HOXB13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 46806165 46806173 2.0E-06 CTAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 46806165 46806174 9.0E-06 CTAATAAAAT 10 NFIA_NFI_full_dimeric_15_1 SELEX + 46807251 46807265 6.0E-06 CTGGCTGACTGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 46807251 46807265 7.0E-06 CTGGCAGTCAGCCAG 15 FOXA1_MA0148.1 JASPAR + 46802128 46802138 1.0E-06 TGTTTGCTCTG 11 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 46810559 46810569 0.0E+00 TGTAAAGGTCA 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 46809438 46809449 8.0E-06 AATACAAATAAA 12 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 46810555 46810567 2.0E-06 TAAAGGTCACAGG 13 TBX19_TBX_DBD_dimeric_20_1 SELEX + 46810622 46810641 8.0E-06 CTTGGCACCTCGGTGTCAGC 20 TBX19_TBX_DBD_dimeric_20_1 SELEX - 46810622 46810641 6.0E-06 GCTGACACCGAGGTGCCAAG 20 NFIX_NFI_full_dimeric_15_2 SELEX + 46807251 46807265 8.0E-06 CTGGCTGACTGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 46807251 46807265 8.0E-06 CTGGCAGTCAGCCAG 15 NFYA_MA0060.1 JASPAR - 46806133 46806148 0.0E+00 CGCAGCCAATCAGCGC 16 Pax4_MA0068.1 JASPAR + 46806195 46806224 2.0E-06 AAATACTTTACCCCAGCTTATTCTCTCTCT 30 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 46806164 46806173 5.0E-06 GCTAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 46806165 46806173 7.0E-06 CTAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 46806165 46806174 2.0E-06 CTAATAAAAT 10 SP1_MA0079.2 JASPAR - 46806447 46806456 3.0E-06 CCCCTCCCCC 10 FOXI1_MA0042.1 JASPAR - 46809439 46809450 6.0E-06 ATTTATTTGTAT 12 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 46809389 46809398 6.0E-06 TGAAGGTCAC 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 46802074 46802083 8.0E-06 CCATTAAAAA 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 46806165 46806174 2.0E-06 CTAATAAAAT 10 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 46806364 46806373 5.0E-06 TCCACTTAAA 10 T_TBX_full_dimeric_16_1 SELEX + 46810624 46810639 3.0E-06 TGGCACCTCGGTGTCA 16 T_TBX_full_dimeric_16_1 SELEX - 46810624 46810639 3.0E-06 TGACACCGAGGTGCCA 16 Nkx3-2_MA0122.1 JASPAR - 46806364 46806372 2.0E-06 TTAAGTGGA 9 NFIB_NFI_full_dimeric_15_1 SELEX + 46807251 46807265 7.0E-06 CTGGCTGACTGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 46807251 46807265 9.0E-06 CTGGCAGTCAGCCAG 15 PPARG_MA0066.1 JASPAR - 46807040 46807059 8.0E-06 GTGGGTCTCCGTCCCTCCGT 20 Tp53_p53l_DBD_dimeric_17_1 SELEX + 46801686 46801702 3.0E-06 ACAGGTTCCATACAAGT 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 46806165 46806174 2.0E-06 CTAATAAAAT 10 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 46806364 46806374 7.0E-06 TCCACTTAAAA 11 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 46806164 46806174 2.0E-06 GCTAATAAAAT 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 46809439 46809451 8.0E-06 ATACAAATAAATT 13 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 46806165 46806173 9.0E-06 CTAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 46806164 46806174 8.0E-06 GCTAATAAAAT 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 46806165 46806174 2.0E-06 CTAATAAAAT 10 V_FOXP1_01_M00987 TRANSFAC - 46801695 46801714 9.0E-06 TTTTTCGGATTTACTTGTAT 20 V_FOXP1_01_M00987 TRANSFAC - 46806371 46806390 6.0E-06 TTTTCTCTCTTGTTGTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 46809429 46809448 0.0E+00 TTATTTGTATTGAAATGTAT 20 V_FREAC7_01_M00293 TRANSFAC + 46809436 46809451 5.0E-06 TCAATACAAATAAATT 16 V_HSF1_Q6_M01023 TRANSFAC + 46802018 46802034 8.0E-06 CTGCCCGCAGGTTCTCC 17 V_DMRT3_01_M01148 TRANSFAC + 46809423 46809437 0.0E+00 AAATGGATACATTTC 15 V_HNF1_02_M01379 TRANSFAC + 46809362 46809378 4.0E-06 AGATGGTTAACTTAAAC 17 V_ZFX_01_M01593 TRANSFAC - 46806141 46806156 6.0E-06 CCCCAGGCCGCAGCCA 16 V_ERR3_Q2_01_M02094 TRANSFAC + 46809387 46809399 6.0E-06 AGTGAAGGTCACC 13 V_SATB1_Q3_M01723 TRANSFAC + 46806172 46806187 6.0E-06 AATCCTAAAGGCAGAA 16 V_NR2F2_03_M02783 TRANSFAC - 46810555 46810570 6.0E-06 CTGTAAAGGTCACAGG 16 V_SRY_02_M00160 TRANSFAC - 46802123 46802134 8.0E-06 GCAAACAAAAGA 12 V_CEBP_01_M00159 TRANSFAC + 46802706 46802718 1.0E-06 TCTTTGGTAAATA 13 V_AP4_Q6_M00176 TRANSFAC - 46809397 46809406 2.0E-06 CACAGCTGGT 10 V_FOXO3A_Q1_M01137 TRANSFAC + 46806370 46806381 3.0E-06 TAAAAACAACAA 12 V_HNF3_Q6_01_M01012 TRANSFAC + 46802123 46802140 6.0E-06 TCTTTTGTTTGCTCTGAA 18 V_MAF_Q6_M00648 TRANSFAC + 46806390 46806405 7.0E-06 AGGAAGGAGGTGTCCT 16 V_FOXJ1_03_M02750 TRANSFAC - 46802122 46802137 3.0E-06 AGAGCAAACAAAAGAT 16 V_SP1_03_M02281 TRANSFAC - 46806447 46806456 3.0E-06 CCCCTCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 46809438 46809450 5.0E-06 ATTTATTTGTATT 13 V_NKX24_01_M01350 TRANSFAC + 46806361 46806376 2.0E-06 CATTCCACTTAAAAAC 16 V_AP4_Q6_02_M01860 TRANSFAC + 46807269 46807281 8.0E-06 CCAGCTGCGGGAG 13 V_HOXD13_01_M01404 TRANSFAC + 46806162 46806177 0.0E+00 AAGCTAATAAAATCCT 16 V_AP4_Q6_01_M00927 TRANSFAC + 46807268 46807276 6.0E-06 ACCAGCTGC 9 V_NFY_Q6_01_M00775 TRANSFAC - 46806137 46806149 8.0E-06 CCGCAGCCAATCA 13 V_BARBIE_01_M00238 TRANSFAC - 46810400 46810414 3.0E-06 AAAGAAAGCTGGGGG 15 V_SOX7_03_M02807 TRANSFAC + 46809433 46809454 6.0E-06 ATTTCAATACAAATAAATTCTA 22 V_FOXA2_02_M02853 TRANSFAC + 46806371 46806385 8.0E-06 AAAAACAACAAGAGA 15 V_ZFP105_03_M02827 TRANSFAC + 46806370 46806384 0.0E+00 TAAAAACAACAAGAG 15 V_HOXB13_01_M01467 TRANSFAC + 46806162 46806177 0.0E+00 AAGCTAATAAAATCCT 16 V_NKX31_02_M02782 TRANSFAC + 46806360 46806376 4.0E-06 TCATTCCACTTAAAAAC 17 V_NKX26_01_M01322 TRANSFAC + 46806361 46806376 5.0E-06 CATTCCACTTAAAAAC 16 V_MRF2_01_M00454 TRANSFAC + 46809432 46809445 9.0E-06 CATTTCAATACAAA 14 V_HOXB9_01_M01426 TRANSFAC + 46806162 46806177 2.0E-06 AAGCTAATAAAATCCT 16 V_MAZ_Q6_01_M02023 TRANSFAC + 46806447 46806460 6.0E-06 GGGGGAGGGGAGGC 14 V_AP2BETA_Q3_M01858 TRANSFAC + 46806143 46806158 3.0E-06 GCTGCGGCCTGGGGGA 16 V_HNF3_Q6_M00791 TRANSFAC - 46802126 46802138 7.0E-06 CAGAGCAAACAAA 13 V_HNF3_Q6_M00791 TRANSFAC + 46809437 46809449 4.0E-06 CAATACAAATAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 46802128 46802138 8.0E-06 TGTTTGCTCTG 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 46809437 46809447 6.0E-06 TATTTGTATTG 11 V_NKX22_02_M01372 TRANSFAC + 46806361 46806377 8.0E-06 CATTCCACTTAAAAACA 17 V_MATH1_Q2_M01716 TRANSFAC - 46809396 46809405 6.0E-06 ACAGCTGGTG 10 V_OCT1_04_M00138 TRANSFAC - 46809426 46809448 1.0E-06 TTATTTGTATTGAAATGTATCCA 23 V_OCT1_04_M00138 TRANSFAC + 46809431 46809453 1.0E-06 ACATTTCAATACAAATAAATTCT 23 V_REX1_03_M01744 TRANSFAC + 46810802 46810813 7.0E-06 ACGATGGCGGCC 12 V_AP4_Q5_M00175 TRANSFAC - 46809397 46809406 6.0E-06 CACAGCTGGT 10 V_SOX12_04_M02900 TRANSFAC - 46810344 46810359 5.0E-06 CAGGACACAAAGGCAT 16 V_GRE_C_M00205 TRANSFAC + 46809394 46809409 4.0E-06 GTCACCAGCTGTGCTG 16 V_NR1B1_Q6_M02110 TRANSFAC - 46810557 46810566 3.0E-06 AAAGGTCACA 10 V_FOXO1_Q5_M01216 TRANSFAC + 46802154 46802162 1.0E-05 AAAAACAGA 9 V_FOXO1_Q5_M01216 TRANSFAC + 46806371 46806379 5.0E-06 AAAAACAAC 9 V_NKX32_02_M01482 TRANSFAC + 46806360 46806376 4.0E-06 TCATTCCACTTAAAAAC 17 V_CAAT_01_M00254 TRANSFAC - 46806137 46806148 5.0E-06 CGCAGCCAATCA 12 V_ZIC2_05_M02940 TRANSFAC - 46810353 46810367 5.0E-06 GCTCCCAGCAGGACA 15 V_ALPHACP1_01_M00687 TRANSFAC - 46806136 46806146 1.0E-06 CAGCCAATCAG 11 V_NFYC_Q5_M02107 TRANSFAC - 46806133 46806146 0.0E+00 CAGCCAATCAGCGC 14 V_NKX25_03_M01414 TRANSFAC + 46806361 46806376 1.0E-06 CATTCCACTTAAAAAC 16 V_TAL1_01_M01591 TRANSFAC - 46806383 46806395 0.0E+00 CTTCCTTTTCTCT 13 V_HOXB8_01_M01451 TRANSFAC - 46802137 46802152 6.0E-06 ACTCGCAATAAATTCA 16 V_IPF1_05_M01255 TRANSFAC - 46802074 46802085 4.0E-06 GACCATTAAAAA 12 V_FOXL1_02_M02857 TRANSFAC + 46809433 46809448 7.0E-06 ATTTCAATACAAATAA 16 V_MYOGNF1_01_M00056 TRANSFAC - 46807249 46807277 0.0E+00 CGCAGCTGGTTTCTGGCAGTCAGCCAGGC 29 V_ERR1_Q2_M00511 TRANSFAC - 46810557 46810570 3.0E-06 CTGTAAAGGTCACA 14 V_PXR_Q2_M00964 TRANSFAC - 46810412 46810423 3.0E-06 TGGGTCAGTAAA 12 V_ERR2_01_M01589 TRANSFAC - 46810556 46810567 9.0E-06 TAAAGGTCACAG 12 V_TCF1_06_M02815 TRANSFAC + 46809362 46809378 7.0E-06 AGATGGTTAACTTAAAC 17 V_NFY_01_M00287 TRANSFAC - 46806133 46806148 0.0E+00 CGCAGCCAATCAGCGC 16 V_HNF1B_01_M01425 TRANSFAC + 46809363 46809379 9.0E-06 GATGGTTAACTTAAACT 17 V_ASCL2_04_M02841 TRANSFAC + 46806015 46806030 8.0E-06 CTCTCCCCACCCAGGC 16 V_MTATA_B_M00320 TRANSFAC + 46806046 46806062 4.0E-06 CGTTTTAAATCGCTCCC 17 V_ZFP281_01_M01597 TRANSFAC + 46806446 46806456 2.0E-06 GGGGGGAGGGG 11 V_RARA_03_M02787 TRANSFAC - 46810555 46810570 4.0E-06 CTGTAAAGGTCACAGG 16 V_DMRT2_01_M01147 TRANSFAC + 46809422 46809437 6.0E-06 TAAATGGATACATTTC 16 V_HFH3_01_M00289 TRANSFAC - 46809438 46809450 4.0E-06 ATTTATTTGTATT 13 V_FOXJ2_01_M00422 TRANSFAC + 46809435 46809452 8.0E-06 TTCAATACAAATAAATTC 18 V_ZIC1_04_M02835 TRANSFAC - 46810595 46810608 6.0E-06 AACCCCCGGGGGCG 14 V_HNF3B_Q6_M02014 TRANSFAC + 46802127 46802135 6.0E-06 TTGTTTGCT 9 V_CTF1_01_M01196 TRANSFAC - 46807251 46807264 6.0E-06 TGGCAGTCAGCCAG 14 V_HOXA10_01_M01464 TRANSFAC + 46806162 46806177 3.0E-06 AAGCTAATAAAATCCT 16 V_NFYA_Q5_M02106 TRANSFAC - 46806133 46806146 0.0E+00 CAGCCAATCAGCGC 14 V_HOXD10_01_M01375 TRANSFAC + 46806162 46806178 2.0E-06 AAGCTAATAAAATCCTA 17 TLX1_NFIC_MA0119.1 JASPAR - 46807251 46807264 6.0E-06 TGGCAGTCAGCCAG 14 V_DTYPEPA_B_M00334 TRANSFAC - 46802075 46802084 3.0E-06 ACCATTAAAA 10 V_ARID5A_04_M02840 TRANSFAC + 46809433 46809449 2.0E-06 ATTTCAATACAAATAAA 17 V_ZIC1_05_M02939 TRANSFAC - 46810353 46810367 5.0E-06 GCTCCCAGCAGGACA 15 V_NANOG_02_M01247 TRANSFAC + 46806370 46806389 9.0E-06 TAAAAACAACAAGAGAGAAA 20 V_NKX21_01_M01312 TRANSFAC + 46806361 46806376 9.0E-06 CATTCCACTTAAAAAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.