Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SLC9A6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10479 solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6 chrX + 135062582 - 135068085 135067585 Transcription Factor Binding Sites   Download all TFBS in the SLC9A6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXC13_homeodomain_DBD_monomeric_11_1 SELEX - 135066938 135066948 5.0E-06 GCTCGTAAACA 11 NFIA_NFI_full_dimeric_15_1 SELEX + 135064030 135064044 5.0E-06 CTGGCAAAGGGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 135064030 135064044 6.0E-06 CTGGCCCTTTGCCAG 15 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 135067575 135067588 6.0E-06 GGCCCCGCCCCTTT 14 FOXO3_MA0157.1 JASPAR - 135067045 135067052 7.0E-06 TGTAAACA 8 FOXD1_MA0031.1 JASPAR - 135067044 135067051 7.0E-06 GTAAACAT 8 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX - 135066938 135066948 3.0E-06 GCTCGTAAACA 11 NFIX_NFI_full_dimeric_15_2 SELEX + 135064030 135064044 5.0E-06 CTGGCAAAGGGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 135064030 135064044 4.0E-06 CTGGCCCTTTGCCAG 15 Ar_MA0007.1 JASPAR + 135066959 135066980 3.0E-06 CTAAGCACAAACCGATCCAATC 22 SP4_C2H2_full_monomeric_17_1 SELEX + 135067573 135067589 6.0E-06 CGGGCCCCGCCCCTTTC 17 NRL_bZIP_DBD_monomeric_11_1 SELEX - 135064016 135064026 5.0E-06 GATATGCTGAC 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 135065038 135065053 0.0E+00 TTCCCAGAATGCCTTG 16 NFIB_NFI_full_dimeric_15_1 SELEX + 135064030 135064044 5.0E-06 CTGGCAAAGGGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 135064030 135064044 6.0E-06 CTGGCCCTTTGCCAG 15 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX - 135066938 135066948 5.0E-06 GCTCGTAAACA 11 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 135064007 135064024 7.0E-06 TATGCTGACCTCTTCTTT 18 MAFK_bZIP_full_monomeric_12_1 SELEX - 135064016 135064027 2.0E-06 AGATATGCTGAC 12 FOXB1_forkhead_full_monomeric_9_1 SELEX - 135067044 135067052 3.0E-06 TGTAAACAT 9 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 135067044 135067054 1.0E-05 CATGTAAACAT 11 V_STAT5A_Q6_M01890 TRANSFAC + 135065034 135065046 9.0E-06 GATTTTCCCAGAA 13 V_NFKB_Q6_01_M00774 TRANSFAC - 135065031 135065046 4.0E-06 TTCTGGGAAAATCCTA 16 V_FOXO3_02_M02270 TRANSFAC - 135067045 135067052 7.0E-06 TGTAAACA 8 V_XFD1_01_M00267 TRANSFAC - 135066934 135066947 8.0E-06 CTCGTAAACACTTC 14 V_ZFP410_04_M02936 TRANSFAC - 135067635 135067651 5.0E-06 GCCTCCCGCCCCTACCT 17 V_MAFK_03_M02776 TRANSFAC - 135064014 135064028 4.0E-06 AAGATATGCTGACCT 15 V_FOXA2_04_M02749 TRANSFAC - 135067040 135067056 8.0E-06 TACATGTAAACATCTGA 17 V_NF1A_Q6_M02103 TRANSFAC - 135064029 135064044 1.0E-06 CTGGCCCTTTGCCAGA 16 V_MAFB_05_M02775 TRANSFAC - 135064011 135064027 7.0E-06 AGATATGCTGACCTCTT 17 V_SP1_Q6_01_M00931 TRANSFAC - 135067576 135067585 4.0E-06 GGGGCGGGGC 10 V_EAR2_Q2_M01728 TRANSFAC + 135064092 135064105 5.0E-06 TCAACTCTGCCCTT 14 V_STAT5B_01_M00459 TRANSFAC - 135065035 135065049 9.0E-06 GCATTCTGGGAAAAT 15 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 135065033 135065044 3.0E-06 GGATTTTCCCAG 12 V_NKX24_01_M01350 TRANSFAC - 135065010 135065025 4.0E-06 CTATCTACTTAAATAT 16 V_HOXA13_03_M01430 TRANSFAC - 135066936 135066951 1.0E-06 AATGCTCGTAAACACT 16 V_HOXC13_01_M01317 TRANSFAC - 135066936 135066951 2.0E-06 AATGCTCGTAAACACT 16 V_GC_01_M00255 TRANSFAC - 135067574 135067587 9.0E-06 AAGGGGCGGGGCCC 14 V_STAF_01_M00262 TRANSFAC + 135065036 135065057 0.0E+00 TTTTCCCAGAATGCCTTGACTT 22 V_NKX31_02_M02782 TRANSFAC - 135065010 135065026 4.0E-06 GCTATCTACTTAAATAT 17 V_NKX26_01_M01322 TRANSFAC - 135065010 135065025 4.0E-06 CTATCTACTTAAATAT 16 V_SOX7_04_M02911 TRANSFAC - 135064116 135064137 4.0E-06 TTACTTATTGTCTATGGCTGCT 22 V_OLF1_01_M00261 TRANSFAC - 135065658 135065679 3.0E-06 TTCTGCTCCCCCGAGAATGTAC 22 V_IRX4_01_M01410 TRANSFAC + 135064047 135064063 5.0E-06 AGTATATATGTAAACTT 17 V_IRX4_01_M01410 TRANSFAC - 135067044 135067060 1.0E-06 TCTTTACATGTAAACAT 17 V_IRX4_01_M01410 TRANSFAC + 135067045 135067061 0.0E+00 TGTTTACATGTAAAGAA 17 V_HOXD12_01_M01380 TRANSFAC - 135066935 135066951 7.0E-06 AATGCTCGTAAACACTT 17 V_SP1_Q6_M00196 TRANSFAC - 135067575 135067587 1.0E-06 AAGGGGCGGGGCC 13 V_HNF3A_01_M01261 TRANSFAC - 135067044 135067053 1.0E-06 ATGTAAACAT 10 V_HOXD11_01_M01434 TRANSFAC - 135066935 135066951 8.0E-06 AATGCTCGTAAACACTT 17 V_IRF3_06_M02871 TRANSFAC - 135068020 135068033 4.0E-06 AGAGAAAGGGGCAG 14 V_OCT1_04_M00138 TRANSFAC + 135064046 135064068 8.0E-06 TAGTATATATGTAAACTTTGCAA 23 V_IK2_01_M00087 TRANSFAC + 135066948 135066959 4.0E-06 CATTGGGAAATC 12 V_PPARG_03_M00528 TRANSFAC - 135064092 135064108 1.0E-06 TACAAGGGCAGAGTTGA 17 V_PBX1_05_M01967 TRANSFAC + 135063990 135064003 1.0E-05 AATGATTGGCAGAG 14 V_KLF7_03_M02773 TRANSFAC + 135067573 135067588 2.0E-06 CGGGCCCCGCCCCTTT 16 V_XFD2_01_M00268 TRANSFAC - 135067041 135067054 8.0E-06 CATGTAAACATCTG 14 V_NKX3A_01_M00451 TRANSFAC + 135064128 135064139 9.0E-06 CAATAAGTAAAG 12 V_STAT4_Q5_M02117 TRANSFAC - 135065037 135065046 7.0E-06 TTCTGGGAAA 10 V_IRX3_01_M01318 TRANSFAC + 135064047 135064063 8.0E-06 AGTATATATGTAAACTT 17 V_IRX3_01_M01318 TRANSFAC - 135067044 135067060 1.0E-06 TCTTTACATGTAAACAT 17 V_IRX3_01_M01318 TRANSFAC + 135067045 135067061 0.0E+00 TGTTTACATGTAAAGAA 17 V_IRX5_01_M01472 TRANSFAC - 135067044 135067060 3.0E-06 TCTTTACATGTAAACAT 17 V_IRX5_01_M01472 TRANSFAC + 135067045 135067061 1.0E-06 TGTTTACATGTAAAGAA 17 V_NKX32_02_M01482 TRANSFAC - 135065010 135065026 1.0E-06 GCTATCTACTTAAATAT 17 V_SP4_Q5_M01273 TRANSFAC + 135067576 135067586 8.0E-06 GCCCCGCCCCT 11 V_HFH8_01_M00294 TRANSFAC + 135067042 135067054 6.0E-06 AGATGTTTACATG 13 V_IRX3_02_M01485 TRANSFAC - 135067044 135067060 2.0E-06 TCTTTACATGTAAACAT 17 V_IRX3_02_M01485 TRANSFAC + 135067045 135067061 1.0E-06 TGTTTACATGTAAAGAA 17 V_GFI1_Q6_M01067 TRANSFAC - 135067973 135067985 8.0E-06 ATAAATCATAGCC 13 V_CIZ_01_M00734 TRANSFAC - 135066916 135066924 2.0E-06 GAAAAAATC 9 V_NKX25_03_M01414 TRANSFAC - 135065010 135065025 4.0E-06 CTATCTACTTAAATAT 16 V_HOXB8_01_M01451 TRANSFAC - 135067977 135067992 7.0E-06 ACTTGCCATAAATCAT 16 V_IRX2_01_M01405 TRANSFAC - 135067044 135067060 1.0E-06 TCTTTACATGTAAACAT 17 V_IRX2_01_M01405 TRANSFAC + 135067045 135067061 1.0E-06 TGTTTACATGTAAAGAA 17 V_FOXJ2_01_M00422 TRANSFAC - 135067040 135067057 6.0E-06 TTACATGTAAACATCTGA 18 V_RFX3_05_M02892 TRANSFAC + 135067375 135067397 3.0E-06 GCCTCTGCTTGGTTACACTGAGC 23 V_CTF1_01_M01196 TRANSFAC - 135064030 135064043 7.0E-06 TGGCCCTTTGCCAG 14 V_CTF1_01_M01196 TRANSFAC + 135064031 135064044 6.0E-06 TGGCAAAGGGCCAG 14 V_SP1_Q2_01_M00933 TRANSFAC + 135067577 135067586 7.0E-06 CCCCGCCCCT 10 V_ZFP128_04_M02932 TRANSFAC + 135064047 135064060 4.0E-06 AGTATATATGTAAA 14 V_ZFP128_04_M02932 TRANSFAC - 135064047 135064060 5.0E-06 TTTACATATATACT 14 V_SP1_Q4_01_M00932 TRANSFAC - 135067575 135067587 0.0E+00 AAGGGGCGGGGCC 13 V_IRXB3_01_M01377 TRANSFAC + 135064047 135064063 5.0E-06 AGTATATATGTAAACTT 17 V_IRXB3_01_M01377 TRANSFAC - 135067044 135067060 0.0E+00 TCTTTACATGTAAACAT 17 V_IRXB3_01_M01377 TRANSFAC + 135067045 135067061 1.0E-06 TGTTTACATGTAAAGAA 17 TLX1_NFIC_MA0119.1 JASPAR - 135064030 135064043 7.0E-06 TGGCCCTTTGCCAG 14 TLX1_NFIC_MA0119.1 JASPAR + 135064031 135064044 6.0E-06 TGGCAAAGGGCCAG 14 V_STAT1_Q6_M01823 TRANSFAC - 135065037 135065046 2.0E-06 TTCTGGGAAA 10 V_CEBPG_Q6_01_M01869 TRANSFAC + 135066948 135066959 2.0E-06 CATTGGGAAATC 12 V_NANOG_02_M01247 TRANSFAC + 135065058 135065077 4.0E-06 TCTCAGTGACAAAAGAAGCA 20 V_NKX21_01_M01312 TRANSFAC - 135065010 135065025 5.0E-06 CTATCTACTTAAATAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.