Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CDX2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 1045 caudal type homeobox 2 chr13 - 28543005 - 28548505 28543505 CDX2_homeodomain_DBD_monomeric_9_1 V_CDX2_Q5_01_M01659 V_CDX2_Q5_M00729 V_CDX2_01_M01449 Transcription Factor Binding Sites   Download all TFBS in the CDX2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 28540392 28540404 0.0E+00 ATTAACATAAACA 13 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 28545584 28545593 4.0E-06 GCCATAAAAA 10 SP3_C2H2_DBD_monomeric_11_1 SELEX + 28540834 28540844 1.0E-05 CCCACACCCCC 11 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 28545584 28545593 4.0E-06 GCCATAAAAA 10 POU2F1_POU_DBD_dimeric_14_1 SELEX + 28543611 28543624 2.0E-06 GCTAAATATTCAAA 14 Tp53_p53l_DBD_dimeric_18_1 SELEX - 28543104 28543121 6.0E-06 ACAAGGACGTGAGCATGT 18 SRY_HMG_DBD_dimeric_15_1 SELEX + 28545526 28545540 1.0E-05 AACAATCGCTTTATT 15 FOXF2_MA0030.1 JASPAR + 28540393 28540406 3.0E-06 TTAACATAAACACG 14 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 28540392 28540400 5.0E-06 TATGTTAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 28540392 28540400 6.0E-06 TATGTTAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX - 28540389 28540402 4.0E-06 TTTATGTTAATGCG 14 POU1F1_POU_DBD_monomeric_14_1 SELEX - 28543549 28543562 0.0E+00 AAAATGCAAATTAT 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 28540391 28540401 3.0E-06 TTATGTTAATG 11 POU2F2_POU_DBD_monomeric_11_1 SELEX - 28543551 28543561 3.0E-06 AAATGCAAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 28540392 28540400 5.0E-06 TATGTTAAT 9 POU3F4_POU_DBD_monomeric_9_1 SELEX - 28543552 28543560 7.0E-06 AATGCAAAT 9 ZNF238_C2H2_full_monomeric_13_1 SELEX + 28545627 28545639 8.0E-06 TTTCCAGCTGTGT 13 SPIB_ETS_DBD_monomeric_14_1 SELEX + 28541599 28541612 1.0E-06 GAAAAGCGGAAGCG 14 RUNX3_RUNX_full_monomeric_10_1 SELEX + 28540177 28540186 7.0E-06 AAACCACAAC 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 28545585 28545594 7.0E-06 GGCCATAAAA 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 28540177 28540185 8.0E-06 AAACCACAA 9 POU3F3_POU_DBD_monomeric_13_1 SELEX - 28540390 28540402 7.0E-06 TTTATGTTAATGC 13 POU3F3_POU_DBD_monomeric_13_1 SELEX - 28543550 28543562 0.0E+00 AAAATGCAAATTA 13 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 28545584 28545593 8.0E-06 GCCATAAAAA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 28545584 28545594 1.0E-06 GGCCATAAAAA 11 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 28543611 28543624 3.0E-06 GCTAAATATTCAAA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 28543612 28543623 3.0E-06 CTAAATATTCAA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 28543612 28543623 6.0E-06 TTGAATATTTAG 12 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 28542674 28542683 9.0E-06 AGCAGCTGTC 10 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 28545655 28545667 7.0E-06 AGCCACGTCTTCA 13 SOX18_HMG_full_dimeric_15_1 SELEX + 28545526 28545540 9.0E-06 AACAATCGCTTTATT 15 Mycn_MA0104.2 JASPAR - 28543007 28543016 3.0E-06 ACCACGTGGC 10 POU3F1_POU_DBD_monomeric_12_1 SELEX - 28540390 28540401 3.0E-06 TTATGTTAATGC 12 POU3F1_POU_DBD_monomeric_12_1 SELEX - 28543550 28543561 1.0E-06 AAATGCAAATTA 12 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 28545585 28545593 4.0E-06 GCCATAAAA 9 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 28543612 28543623 3.0E-06 CTAAATATTCAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 28543612 28543623 7.0E-06 TTGAATATTTAG 12 CREB3L1_bZIP_full_dimeric_14_1 SELEX - 28545655 28545668 4.0E-06 GAGCCACGTCTTCA 14 Pou5f1_MA0142.1 JASPAR - 28543552 28543566 0.0E+00 TTTTAAAATGCAAAT 15 POU2F1_POU_DBD_monomeric_12_1 SELEX - 28540391 28540402 4.0E-06 TTTATGTTAATG 12 POU2F1_POU_DBD_monomeric_12_1 SELEX - 28543551 28543562 2.0E-06 AAAATGCAAATT 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 28543006 28543017 8.0E-06 CGCCACGTGGTA 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX - 28543006 28543017 7.0E-06 TACCACGTGGCG 12 Sox11_HMG_DBD_dimeric_15_1 SELEX + 28545526 28545540 9.0E-06 AACAATCGCTTTATT 15 SPI1_ETS_full_monomeric_14_1 SELEX + 28541599 28541612 1.0E-06 GAAAAGCGGAAGCG 14 RUNX1_MA0002.2 JASPAR - 28540177 28540187 3.0E-06 TGTTGTGGTTT 11 POU3F2_POU_DBD_monomeric_12_1 SELEX - 28540390 28540401 4.0E-06 TTATGTTAATGC 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 28543550 28543561 1.0E-06 AAATGCAAATTA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 28545584 28545594 2.0E-06 GGCCATAAAAA 11 Sox2_MA0143.1 JASPAR - 28543553 28543567 8.0E-06 CTTTTAAAATGCAAA 15 Sox2_MA0143.1 JASPAR - 28543560 28543574 8.0E-06 CCTTTATCTTTTAAA 15 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 28545585 28545593 8.0E-06 GCCATAAAA 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 28540392 28540404 1.0E-06 ATTAACATAAACA 13 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 28545585 28545593 8.0E-06 GCCATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 28545584 28545594 3.0E-06 GGCCATAAAAA 11 V_HOXA9_01_M01351 TRANSFAC - 28545580 28545596 9.0E-06 TGGGCCATAAAAAAGCA 17 V_SPI1_01_M01203 TRANSFAC + 28540462 28540478 7.0E-06 AGTAAAGGGAACTAACG 17 V_SPI1_01_M01203 TRANSFAC + 28541599 28541615 4.0E-06 GAAAAGCGGAAGCGCTG 17 V_FREAC7_01_M00293 TRANSFAC + 28540393 28540408 0.0E+00 TTAACATAAACACGAC 16 V_AML_Q6_M00769 TRANSFAC - 28540175 28540189 5.0E-06 TTTGTTGTGGTTTGC 15 V_CDX2_Q5_01_M01659 TRANSFAC - 28545583 28545593 5.0E-06 GCCATAAAAAA 11 V_POU3F3_01_M03090 TRANSFAC + 28543549 28543565 2.0E-06 ATAATTTGCATTTTAAA 17 V_POU3F3_01_M03090 TRANSFAC - 28543612 28543628 9.0E-06 AAGGTTTGAATATTTAG 17 V_GCM_Q2_M00634 TRANSFAC - 28545508 28545519 1.0E-06 AATGCCCGCATT 12 V_XFD1_01_M00267 TRANSFAC + 28540395 28540408 9.0E-06 AACATAAACACGAC 14 V_ZFP410_04_M02936 TRANSFAC - 28540866 28540882 4.0E-06 TCATCCCTCCCCTCCAT 17 V_NRSF_Q4_M01028 TRANSFAC + 28542984 28543002 5.0E-06 TCGCTGCCGCTGCAGCTGC 19 V_SOX30_03_M02804 TRANSFAC + 28545522 28545537 1.0E-05 TTGGAACAATCGCTTT 16 V_AML3_Q6_M01856 TRANSFAC + 28540178 28540185 1.0E-05 AACCACAA 8 V_GATA3_03_M00351 TRANSFAC + 28540098 28540107 5.0E-06 AAAGATCTGA 10 V_TCF4_Q5_01_M02033 TRANSFAC + 28540285 28540294 2.0E-06 ATCAAAGAAA 10 V_POU5F1_02_M02245 TRANSFAC - 28543552 28543566 0.0E+00 TTTTAAAATGCAAAT 15 V_SOX5_01_M00042 TRANSFAC - 28543628 28543637 1.0E-06 TTAACAATAA 10 V_FOXJ1_04_M02854 TRANSFAC + 28540177 28540191 5.0E-06 AAACCACAACAAAAG 15 V_OCT1_Q5_01_M00930 TRANSFAC + 28543550 28543560 0.0E+00 TAATTTGCATT 11 V_OCTAMER_01_M01324 TRANSFAC + 28543549 28543565 2.0E-06 ATAATTTGCATTTTAAA 17 V_OCTAMER_01_M01324 TRANSFAC - 28543612 28543628 9.0E-06 AAGGTTTGAATATTTAG 17 V_SRY_02_M00160 TRANSFAC - 28543627 28543638 2.0E-06 CTTAACAATAAA 12 V_OCT1_01_M00135 TRANSFAC - 28543547 28543565 3.0E-06 TTTAAAATGCAAATTATGT 19 V_EVI1_02_M00079 TRANSFAC - 28540278 28540288 7.0E-06 TGATAAGATCG 11 V_POU2F3_01_M01476 TRANSFAC - 28540388 28540403 8.0E-06 GTTTATGTTAATGCGC 16 V_POU2F3_01_M01476 TRANSFAC - 28543548 28543563 1.0E-06 TAAAATGCAAATTATG 16 V_AP4_Q6_M00176 TRANSFAC - 28545629 28545638 5.0E-06 CACAGCTGGA 10 V_POU3F2_02_M00464 TRANSFAC - 28540392 28540401 0.0E+00 TTATGTTAAT 10 V_ARNT_01_M00236 TRANSFAC - 28543004 28543019 8.0E-06 GTTACCACGTGGCGGC 16 V_GABPA_04_M02858 TRANSFAC + 28540366 28540381 3.0E-06 CTTTCATCCCCCTCCC 16 V_SPZ1_01_M00446 TRANSFAC - 28545548 28545562 1.0E-06 GGCGGAGGGAATGGC 15 V_OCT_C_M00210 TRANSFAC + 28543549 28543561 1.0E-06 ATAATTTGCATTT 13 V_PU1_Q4_M01172 TRANSFAC - 28543715 28543733 3.0E-06 CCTTTTCTCTTCCCCTCTC 19 V_CMYC_02_M01154 TRANSFAC - 28543006 28543017 4.0E-06 TACCACGTGGCG 12 V_CDX_Q5_M00991 TRANSFAC - 28543463 28543480 2.0E-06 TACTAATAGAGTCTTGTA 18 V_OCT2_02_M01761 TRANSFAC - 28543613 28543622 4.0E-06 TGAATATTTA 10 V_HNF1_C_M00206 TRANSFAC + 28543610 28543626 9.0E-06 AGCTAAATATTCAAACC 17 V_PR_Q2_M00960 TRANSFAC - 28540019 28540028 7.0E-06 GAGAGAACAG 10 V_CART1_01_M00416 TRANSFAC + 28543547 28543564 3.0E-06 ACATAATTTGCATTTTAA 18 V_RUNX1_01_M02257 TRANSFAC - 28540177 28540187 3.0E-06 TGTTGTGGTTT 11 V_GATA3_05_M02859 TRANSFAC - 28540273 28540294 9.0E-06 TTTCTTTGATAAGATCGCCTTG 22 V_SOX7_04_M02911 TRANSFAC + 28545610 28545631 1.0E-05 TGGCTAATTGTCCCTGTTTTCC 22 V_IRF2_01_M00063 TRANSFAC + 28541599 28541611 3.0E-06 GAAAAGCGGAAGC 13 V_AML2_01_M01759 TRANSFAC + 28540178 28540185 1.0E-05 AACCACAA 8 V_FOXK1_04_M02856 TRANSFAC + 28540176 28540190 0.0E+00 CAAACCACAACAAAA 15 V_HOXB6_01_M01460 TRANSFAC + 28543473 28543488 4.0E-06 TATTAGTAATGACACA 16 MYC_MAX_MA0059.1 JASPAR - 28543007 28543017 7.0E-06 TACCACGTGGC 11 V_OCT1_05_M00161 TRANSFAC + 28543549 28543562 0.0E+00 ATAATTTGCATTTT 14 V_SOX_Q6_M01014 TRANSFAC - 28540281 28540293 1.0E-06 TTCTTTGATAAGA 13 V_TATA_C_M00216 TRANSFAC + 28541630 28541639 5.0E-06 ACTTTAAAAG 10 V_XBP1_02_M01770 TRANSFAC - 28545659 28545669 7.0E-06 AGAGCCACGTC 11 V_OCT1_04_M00138 TRANSFAC - 28543545 28543567 1.0E-06 CTTTTAAAATGCAAATTATGTTT 23 V_CDC5_01_M00478 TRANSFAC + 28540390 28540401 3.0E-06 GCATTAACATAA 12 V_MYCN_01_M02259 TRANSFAC - 28543007 28543016 3.0E-06 ACCACGTGGC 10 V_OCT1_B_M00342 TRANSFAC - 28543551 28543560 4.0E-06 AATGCAAATT 10 V_OCT_Q6_M00795 TRANSFAC + 28543550 28543560 0.0E+00 TAATTTGCATT 11 V_NEUROD_02_M01288 TRANSFAC + 28545628 28545639 2.0E-06 TTCCAGCTGTGT 12 V_FREAC2_01_M00290 TRANSFAC + 28540393 28540408 2.0E-06 TTAACATAAACACGAC 16 V_MYOD_Q6_02_M02100 TRANSFAC - 28542673 28542681 8.0E-06 CAGCTGTCT 9 V_POU5F1_01_M01307 TRANSFAC - 28543551 28543560 1.0E-06 AATGCAAATT 10 V_FAC1_01_M00456 TRANSFAC + 28540178 28540191 3.0E-06 AACCACAACAAAAG 14 V_TAL1_01_M01591 TRANSFAC + 28545399 28545411 8.0E-06 CTTCCTCCTCTTC 13 V_OCT2_01_M01368 TRANSFAC - 28540388 28540403 1.0E-05 GTTTATGTTAATGCGC 16 V_OCT2_01_M01368 TRANSFAC - 28543548 28543563 1.0E-06 TAAAATGCAAATTATG 16 V_FOXL1_02_M02857 TRANSFAC + 28540177 28540192 3.0E-06 AAACCACAACAAAAGC 16 V_FOXL1_02_M02857 TRANSFAC - 28543627 28543642 9.0E-06 AGCTCTTAACAATAAA 16 V_OCT1_Q6_M00195 TRANSFAC - 28543549 28543563 0.0E+00 TAAAATGCAAATTAT 15 V_FOXJ3_06_M02855 TRANSFAC + 28540176 28540192 2.0E-06 CAAACCACAACAAAAGC 17 V_MYOGNF1_01_M00056 TRANSFAC + 28540016 28540044 2.0E-06 AAGCTGTTCTCTCTGGCTCCGTCCCACTT 29 V_OCT1_07_M00248 TRANSFAC - 28543551 28543562 4.0E-06 AAAATGCAAATT 12 V_SOX2_01_M02246 TRANSFAC - 28543553 28543567 8.0E-06 CTTTTAAAATGCAAA 15 V_SOX2_01_M02246 TRANSFAC - 28543560 28543574 8.0E-06 CCTTTATCTTTTAAA 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 28540177 28540184 1.0E-05 TGTGGTTT 8 V_SATB1_01_M01232 TRANSFAC + 28543473 28543484 0.0E+00 TATTAGTAATGA 12 V_LPOLYA_B_M00318 TRANSFAC - 28543626 28543633 7.0E-06 CAATAAAG 8 V_OCT4_01_M01125 TRANSFAC - 28543552 28543566 0.0E+00 TTTTAAAATGCAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.