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CDX1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 1044 caudal type homeobox 1 chr5 + 149541343 - 149546843 149546343 CDX1_homeodomain_DBD_monomeric_9_1 V_CDX_Q5_M00991 V_CDX1_01_M01373 Transcription Factor Binding Sites   Download all TFBS in the CDX1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 149541351 149541369 1.0E-06 GTGCCAGCAGGTGGCGGCC 19 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 149543508 149543521 0.0E+00 GGGGTCAAGGGTCA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 149542868 149542884 9.0E-06 CACTTAGTAAATGCTTA 17 ESR2_MA0258.1 JASPAR - 149543498 149543515 7.0E-06 AAGGGTCAGTATGAACAG 18 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 149543511 149543523 3.0E-06 CAGGGGTCAAGGG 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 149543508 149543521 0.0E+00 GGGGTCAAGGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 149543508 149543521 0.0E+00 GGGGTCAAGGGTCA 14 EWSR1-FLI1_MA0149.1 JASPAR - 149543236 149543253 9.0E-06 GGAAGGGGTCCAGGAGTG 18 NR2F1_MA0017.1 JASPAR + 149543508 149543521 1.0E-06 TGACCCTTGACCCC 14 Ar_MA0007.1 JASPAR - 149548520 149548541 1.0E-06 CATAGAACACAGGGTTCTTAAC 22 E2F8_E2F_DBD_dimeric_12_1 SELEX + 149544243 149544254 1.0E-06 TTTCCCACCAAT 12 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 149543507 149543521 0.0E+00 GGGGTCAAGGGTCAG 15 CTCF_C2H2_full_monomeric_17_1 SELEX - 149543866 149543882 6.0E-06 AGTGCCCTCTAGTTTCA 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 149543508 149543521 0.0E+00 GGGGTCAAGGGTCA 14 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 149543515 149543531 7.0E-06 AAGGGCGGCAGGGGTCA 17 FEV_MA0156.1 JASPAR - 149544006 149544013 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR - 149541702 149541716 1.0E-06 CTTTCTGTTGCAAAT 15 HNF4A_MA0114.1 JASPAR - 149543508 149543520 6.0E-06 GGGTCAAGGGTCA 13 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX - 149543508 149543521 0.0E+00 GGGGTCAAGGGTCA 14 Sox2_MA0143.1 JASPAR - 149541703 149541717 9.0E-06 GCTTTCTGTTGCAAA 15 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 149543508 149543521 0.0E+00 GGGGTCAAGGGTCA 14 V_E2A_Q6_01_M02088 TRANSFAC - 149541354 149541366 4.0E-06 CGCCACCTGCTGG 13 V_AR_02_M00953 TRANSFAC + 149548518 149548544 7.0E-06 GGGTTAAGAACCCTGTGTTCTATGAGA 27 V_BTEB3_Q5_M01865 TRANSFAC - 149543587 149543599 1.0E-06 CAGAGGGAGGAGT 13 V_OBOX1_01_M01450 TRANSFAC - 149543354 149543370 3.0E-06 GGAAGGGTATTATCTAG 17 V_ACAAT_B_M00309 TRANSFAC - 149544247 149544255 8.0E-06 GATTGGTGG 9 V_GATA3_03_M00351 TRANSFAC - 149541778 149541787 0.0E+00 AAAGATCTTA 10 V_POU5F1_02_M02245 TRANSFAC - 149541702 149541716 1.0E-06 CTTTCTGTTGCAAAT 15 V_CEBP_C_M00201 TRANSFAC + 149548435 149548452 9.0E-06 AATCTGCTGAAAGGTACA 18 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 149543507 149543519 3.0E-06 CTGACCCTTGACC 13 V_GABPA_04_M02858 TRANSFAC - 149541862 149541877 2.0E-06 CCCTCTTCCCCCTGGA 16 V_GABPA_04_M02858 TRANSFAC + 149544239 149544254 7.0E-06 CCAGTTTCCCACCAAT 16 V_HNF4A_03_M02220 TRANSFAC - 149543508 149543520 6.0E-06 GGGTCAAGGGTCA 13 V_PPAR_DR1_Q2_M00763 TRANSFAC + 149543508 149543520 1.0E-06 TGACCCTTGACCC 13 V_COUPTF_Q6_M01036 TRANSFAC + 149543503 149543525 0.0E+00 CATACTGACCCTTGACCCCTGCC 23 V_HBP1_Q2_M01661 TRANSFAC - 149541754 149541762 8.0E-06 TTCAATCAG 9 V_AR_03_M00956 TRANSFAC + 149548518 149548544 0.0E+00 GGGTTAAGAACCCTGTGTTCTATGAGA 27 V_ETS_Q4_M00771 TRANSFAC + 149543559 149543570 9.0E-06 TGTCACTTCCTC 12 V_ETS_Q4_M00771 TRANSFAC + 149544315 149544326 0.0E+00 ATCCACTTCCTG 12 V_HELIOSA_02_M01004 TRANSFAC - 149548502 149548512 8.0E-06 TTATGGATAAA 11 V_PR_01_M00954 TRANSFAC + 149548518 149548544 1.0E-06 GGGTTAAGAACCCTGTGTTCTATGAGA 27 V_COUP_01_M00158 TRANSFAC + 149543508 149543521 1.0E-06 TGACCCTTGACCCC 14 V_HNF1_Q6_M00790 TRANSFAC + 149542872 149542889 4.0E-06 TAGTAAATGCTTAATACA 18 V_E12_Q6_M00693 TRANSFAC + 149541356 149541366 6.0E-06 AGCAGGTGGCG 11 V_MRF2_01_M00454 TRANSFAC + 149542878 149542891 9.0E-06 ATGCTTAATACACA 14 V_GR_01_M00955 TRANSFAC + 149548518 149548544 1.0E-06 GGGTTAAGAACCCTGTGTTCTATGAGA 27 V_TEL2_Q6_M00678 TRANSFAC + 149544317 149544326 6.0E-06 CCACTTCCTG 10 V_HNF4A_Q6_01_M02016 TRANSFAC - 149543505 149543519 7.0E-06 GGTCAAGGGTCAGTA 15 V_HNF4_DR1_Q3_M00764 TRANSFAC + 149543508 149543520 1.0E-06 TGACCCTTGACCC 13 V_CTCF_02_M01259 TRANSFAC + 149541348 149541367 1.0E-06 GGAGTGCCAGCAGGTGGCGG 20 V_OCT4_02_M01124 TRANSFAC - 149541701 149541715 0.0E+00 TTTCTGTTGCAAATA 15 V_CTCF_01_M01200 TRANSFAC + 149541350 149541369 0.0E+00 AGTGCCAGCAGGTGGCGGCC 20 V_NKX23_01_M01457 TRANSFAC + 149543453 149543468 8.0E-06 CTTTAAGTGCTAAGGG 16 V_TAL1BETAITF2_01_M00070 TRANSFAC + 149544010 149544025 8.0E-06 CCTGACAGATGGCCCC 16 V_TFIII_Q6_M00706 TRANSFAC - 149543590 149543598 6.0E-06 AGAGGGAGG 9 V_PTF1BETA_Q6_M00657 TRANSFAC - 149544235 149544248 8.0E-06 GGGAAACTGGCAAG 14 V_MYOD_Q6_02_M02100 TRANSFAC + 149543316 149543324 8.0E-06 CAGCTGTCT 9 V_DR1_Q3_M00762 TRANSFAC - 149543508 149543520 0.0E+00 GGGTCAAGGGTCA 13 NR1H2_RXRA_MA0115.1 JASPAR - 149543506 149543522 0.0E+00 AGGGGTCAAGGGTCAGT 17 V_NANOG_01_M01123 TRANSFAC + 149544000 149544011 8.0E-06 CAGCCCATTTCC 12 V_HNF4_Q6_01_M01031 TRANSFAC - 149543507 149543520 5.0E-06 GGGTCAAGGGTCAG 14 V_PXR_Q2_M00964 TRANSFAC + 149548517 149548528 9.0E-06 GGGGTTAAGAAC 12 V_ESRRA_04_M02852 TRANSFAC - 149543510 149543526 1.0E-06 CGGCAGGGGTCAAGGGT 17 V_XBP1_01_M00251 TRANSFAC + 149543550 149543566 1.0E-05 TGACTCACGTGTCACTT 17 V_TFIIA_Q6_M00707 TRANSFAC - 149544021 149544032 8.0E-06 TCTGTAAGGGGC 12 V_E47_01_M00002 TRANSFAC + 149541354 149541368 9.0E-06 CCAGCAGGTGGCGGC 15 V_ETS1_B_M00339 TRANSFAC - 149543557 149543571 9.0E-06 GGAGGAAGTGACACG 15 V_MEF3_B_M00319 TRANSFAC - 149541711 149541723 1.0E-05 GGCTCAGCTTTCT 13 V_TITF1_Q3_M00432 TRANSFAC - 149544262 149544271 2.0E-06 ACTCAAGTTT 10 V_HSF_Q6_M00641 TRANSFAC - 149541416 149541428 4.0E-06 TTCCAGAGGCCTC 13 V_SOX2_01_M02246 TRANSFAC - 149541703 149541717 9.0E-06 GCTTTCTGTTGCAAA 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 149543236 149543253 9.0E-06 GGAAGGGGTCCAGGAGTG 18 V_PR_02_M00957 TRANSFAC + 149548518 149548544 0.0E+00 GGGTTAAGAACCCTGTGTTCTATGAGA 27 V_DR3_Q4_M00966 TRANSFAC + 149544314 149544334 8.0E-06 CATCCACTTCCTGACCTGGGA 21 V_RXRLXRB_01_M01198 TRANSFAC - 149543508 149543520 1.0E-06 GGGTCAAGGGTCA 13 V_HNF4_01_M00134 TRANSFAC - 149543505 149543523 8.0E-06 CAGGGGTCAAGGGTCAGTA 19 V_FEV_01_M02269 TRANSFAC - 149544006 149544013 1.0E-05 CAGGAAAT 8 V_COUP_DR1_Q6_M00765 TRANSFAC + 149543508 149543520 0.0E+00 TGACCCTTGACCC 13 V_BRCA_01_M01082 TRANSFAC - 149541707 149541714 1.0E-05 TTCTGTTG 8 V_AR_Q6_M00962 TRANSFAC - 149544363 149544371 6.0E-06 TGAGCACAT 9 V_RFX1_02_M00281 TRANSFAC + 149543456 149543473 7.0E-06 TAAGTGCTAAGGGAACAA 18 V_ESR2_01_M02377 TRANSFAC - 149543498 149543515 7.0E-06 AAGGGTCAGTATGAACAG 18 V_TR4_03_M01782 TRANSFAC - 149543508 149543520 1.0E-06 GGGTCAAGGGTCA 13 V_OCT4_01_M01125 TRANSFAC - 149541702 149541716 2.0E-06 CTTTCTGTTGCAAAT 15 V_PPARG_01_M00512 TRANSFAC - 149543504 149543524 0.0E+00 GCAGGGGTCAAGGGTCAGTAT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.