Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

IRF9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 10379 interferon regulatory factor 9 chr14 + 24625421 - 24630921 24630421 IRF9_IRF_full_trimeric_15_1 V_ISRE_01_M00258 V_ISGF3G_03_M02771 V_ISGF4G_04_M02875 Transcription Factor Binding Sites   Download all TFBS in the IRF9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 24630363 24630381 0.0E+00 CGGCCACTAGAGGGCAGCA 19 MESP1_bHLH_DBD_dimeric_10_1 SELEX - 24630159 24630168 5.0E-06 TACACCTGTG 10 IRF7_IRF_DBD_dimeric_14_1 SELEX + 24631682 24631695 3.0E-06 TACAAAATGAAAAT 14 ESR2_MA0258.1 JASPAR + 24630738 24630755 1.0E-06 AAAGGTCAGGAGGACCTA 18 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 24631036 24631047 4.0E-06 TTTGTAAACAAT 12 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 24630737 24630749 1.0E-06 CAAAGGTCAGGAG 13 FOXO3_MA0157.1 JASPAR + 24631038 24631045 7.0E-06 TGTAAACA 8 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 24630550 24630566 2.0E-06 AAGATCAGCCAAGGATG 17 MAX_bHLH_DBD_dimeric_10_1 SELEX + 24630401 24630410 4.0E-06 ACCACGTGAT 10 ERG_ETS_full_dimeric_14_1 SELEX - 24631494 24631507 8.0E-06 CCCGGAAGTCCTGC 14 STAT1_MA0137.2 JASPAR - 24630408 24630422 0.0E+00 CTTTTCCCAGAAATC 15 FOXO1_forkhead_DBD_monomeric_8_1 SELEX + 24631039 24631046 7.0E-06 GTAAACAA 8 NR2F1_MA0017.1 JASPAR - 24630732 24630745 6.0E-06 TGACCTTTGCCTAC 14 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 24630315 24630329 2.0E-06 GCCCCCCTGCTGCGA 15 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 24630229 24630246 2.0E-06 GGTGTCACCCAGAGGTCA 18 IRF1_MA0050.1 JASPAR + 24631684 24631695 8.0E-06 CAAAATGAAAAT 12 USF1_bHLH_DBD_dimeric_10_1 SELEX + 24630401 24630410 6.0E-06 ACCACGTGAT 10 Foxq1_MA0040.1 JASPAR - 24631038 24631048 5.0E-06 TATTGTTTACA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 24631039 24631052 6.0E-06 GTAAACAATACATC 14 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 24630230 24630246 2.0E-06 GTGTCACCCAGAGGTCA 17 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX + 24631443 24631456 2.0E-06 GGATGATACAGCTA 14 ZIC3_C2H2_full_monomeric_15_1 SELEX + 24630315 24630329 1.0E-06 GCCCCCCTGCTGCGA 15 SRY_MA0084.1 JASPAR + 24631039 24631047 3.0E-06 GTAAACAAT 9 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 24630230 24630246 2.0E-06 GTGTCACCCAGAGGTCA 17 NFATC1_NFAT_full_dimeric_20_1 SELEX - 24630799 24630818 7.0E-06 CAAGGAAACAAATGGTCCAC 20 TFEB_bHLH_full_dimeric_10_1 SELEX + 24630401 24630410 8.0E-06 ACCACGTGAT 10 CTCF_C2H2_full_monomeric_17_1 SELEX + 24630364 24630380 8.0E-06 GCTGCCCTCTAGTGGCC 17 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 24630739 24630755 2.0E-06 AAGGTCAGGAGGACCTA 17 Gata1_MA0035.2 JASPAR + 24631627 24631637 1.0E-05 TCAGATAAGGG 11 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 24631528 24631538 4.0E-06 TTCAAGGTGAA 11 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 24630401 24630410 7.0E-06 ATCACGTGGT 10 MAX_MA0058.1 JASPAR + 24630400 24630409 4.0E-06 GACCACGTGA 10 PPARG_MA0066.1 JASPAR + 24630738 24630757 1.0E-06 AAAGGTCAGGAGGACCTACT 20 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 24630401 24630410 8.0E-06 ACCACGTGAT 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 24630227 24630246 7.0E-06 ACGGTGTCACCCAGAGGTCA 20 FOXB1_forkhead_full_monomeric_9_1 SELEX + 24631038 24631046 2.0E-06 TGTAAACAA 9 FOXO3_forkhead_full_monomeric_8_1 SELEX + 24631039 24631046 7.0E-06 GTAAACAA 8 MLX_bHLH_full_dimeric_10_1 SELEX - 24630401 24630410 6.0E-06 ATCACGTGGT 10 FLI1_ETS_full_monomeric_14_1 SELEX - 24631494 24631507 1.0E-05 CCCGGAAGTCCTGC 14 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 24631036 24631046 9.0E-06 TTTGTAAACAA 11 ZIC1_C2H2_full_monomeric_14_1 SELEX + 24630315 24630328 1.0E-06 GCCCCCCTGCTGCG 14 V_AREB6_01_M00412 TRANSFAC - 24630542 24630554 1.0E-06 ATCTTACCTGAGT 13 V_HNF3B_01_M00131 TRANSFAC - 24631036 24631050 1.0E-05 TGTATTGTTTACAAA 15 V_STAT5A_Q6_M01890 TRANSFAC + 24630407 24630419 1.0E-06 TGATTTCTGGGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 24630411 24630423 9.0E-06 CCTTTTCCCAGAA 13 V_STAT3_01_M00225 TRANSFAC + 24630405 24630425 6.0E-06 CGTGATTTCTGGGAAAAGGCC 21 V_EBF_Q6_M00977 TRANSFAC - 24630213 24630223 5.0E-06 TTCCCCAGGGA 11 V_GATA1_Q6_M02004 TRANSFAC + 24631624 24631638 0.0E+00 GTTTCAGATAAGGGA 15 V_TCFE2A_04_M02927 TRANSFAC - 24630814 24630830 1.0E-06 AGGGCCAGATGGCAAGG 17 V_FOXO3_02_M02270 TRANSFAC + 24631038 24631045 7.0E-06 TGTAAACA 8 V_AREB6_03_M00414 TRANSFAC - 24630158 24630169 1.0E-06 GTACACCTGTGC 12 V_XFD1_01_M00267 TRANSFAC + 24631036 24631049 1.0E-06 TTTGTAAACAATAC 14 V_ZFP410_04_M02936 TRANSFAC - 24630464 24630480 1.0E-06 TCTCTCCGCCCCTTTCT 17 V_FOXA2_04_M02749 TRANSFAC + 24631034 24631050 1.0E-06 CTTTTGTAAACAATACA 17 V_STAT3STAT3_Q3_M01220 TRANSFAC + 24630410 24630423 2.0E-06 TTTCTGGGAAAAGG 14 V_SOX5_01_M00042 TRANSFAC + 24631040 24631049 2.0E-06 TAAACAATAC 10 V_IRF_Q6_01_M00972 TRANSFAC + 24630437 24630447 6.0E-06 AGAACTGAAAC 11 V_SRY_02_M00160 TRANSFAC + 24631039 24631050 1.0E-06 GTAAACAATACA 12 V_IRF2_Q6_M01882 TRANSFAC + 24630435 24630450 6.0E-06 GGAGAACTGAAACTTA 16 V_NFAT3_Q3_M01734 TRANSFAC - 24631649 24631658 1.0E-05 TAGTTTTCCT 10 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 24630734 24630746 2.0E-06 CTGACCTTTGCCT 13 V_ARNT_01_M00236 TRANSFAC - 24630398 24630413 0.0E+00 GAAATCACGTGGTCTG 16 V_STAT5B_01_M00459 TRANSFAC + 24630408 24630422 2.0E-06 GATTTCTGGGAAAAG 15 V_STAT5B_01_M00459 TRANSFAC - 24630408 24630422 4.0E-06 CTTTTCCCAGAAATC 15 V_FOXJ1_03_M02750 TRANSFAC + 24631036 24631051 2.0E-06 TTTGTAAACAATACAT 16 V_OCT_C_M00210 TRANSFAC - 24631686 24631698 8.0E-06 CACATTTTCATTT 13 V_TR4_Q2_M01725 TRANSFAC - 24630238 24630248 7.0E-06 TCTGACCTCTG 11 V_TR4_Q2_M01725 TRANSFAC - 24630737 24630747 0.0E+00 CCTGACCTTTG 11 V_NERF_Q2_M00531 TRANSFAC - 24630857 24630874 1.0E-06 GGGCAGGAAGTAGGGGTG 18 V_PPAR_DR1_Q2_M00763 TRANSFAC - 24630733 24630745 1.0E-05 TGACCTTTGCCTA 13 V_PRX2_Q2_M02115 TRANSFAC + 24631065 24631073 5.0E-06 TAAAATTAA 9 V_PU1_Q4_M01172 TRANSFAC - 24630668 24630686 2.0E-06 ATCTCCCACTTCCTGACTT 19 V_STAT4_Q4_M01666 TRANSFAC - 24630406 24630419 2.0E-06 TTCCCAGAAATCAC 14 V_ETS_Q4_M00771 TRANSFAC - 24630672 24630683 3.0E-06 TCCCACTTCCTG 12 V_TRF1_01_M01237 TRANSFAC - 24630851 24630865 5.0E-06 GTAGGGGTGGGGTTG 15 V_GC_01_M00255 TRANSFAC - 24630851 24630864 4.0E-06 TAGGGGTGGGGTTG 14 V_SOX7_03_M02807 TRANSFAC + 24631035 24631056 5.0E-06 TTTTGTAAACAATACATCTCTG 22 V_MYCMAX_01_M00118 TRANSFAC + 24630399 24630412 8.0E-06 AGACCACGTGATTT 14 V_MYCMAX_01_M00118 TRANSFAC - 24630399 24630412 8.0E-06 AAATCACGTGGTCT 14 V_HNF4_01_B_M00411 TRANSFAC + 24630732 24630746 7.0E-06 GTAGGCAAAGGTCAG 15 V_COUP_01_M00158 TRANSFAC - 24630732 24630745 6.0E-06 TGACCTTTGCCTAC 14 V_XFD3_01_M00269 TRANSFAC + 24631036 24631049 7.0E-06 TTTGTAAACAATAC 14 V_IRF2_01_M00063 TRANSFAC + 24630436 24630448 5.0E-06 GAGAACTGAAACT 13 MYC_MAX_MA0059.1 JASPAR - 24630401 24630411 7.0E-06 AATCACGTGGT 11 V_E47_02_M00071 TRANSFAC + 24630156 24630171 1.0E-06 ATGCACAGGTGTACAC 16 V_IRF_Q6_M00772 TRANSFAC - 24630437 24630451 1.0E-06 CTAAGTTTCAGTTCT 15 V_IRF_Q6_M00772 TRANSFAC - 24631684 24631698 6.0E-06 CACATTTTCATTTTG 15 V_SOX18_03_M02801 TRANSFAC - 24631036 24631051 2.0E-06 ATGTATTGTTTACAAA 16 V_ISRE_01_M00258 TRANSFAC - 24630435 24630449 1.0E-06 AAGTTTCAGTTCTCC 15 V_USF_02_M00122 TRANSFAC + 24630399 24630412 1.0E-06 AGACCACGTGATTT 14 V_USF_02_M00122 TRANSFAC - 24630399 24630412 1.0E-06 AAATCACGTGGTCT 14 V_IRF3_06_M02871 TRANSFAC + 24630462 24630475 6.0E-06 GTAGAAAGGGGCGG 14 V_USF_01_M00121 TRANSFAC + 24630399 24630412 0.0E+00 AGACCACGTGATTT 14 V_USF_01_M00121 TRANSFAC - 24630399 24630412 0.0E+00 AAATCACGTGGTCT 14 V_TEL2_Q6_M00678 TRANSFAC - 24630672 24630681 6.0E-06 CCACTTCCTG 10 V_TEL2_Q6_M00678 TRANSFAC + 24630862 24630871 1.0E-06 CTACTTCCTG 10 V_ERALPHA_01_M01801 TRANSFAC + 24630740 24630754 9.0E-06 AGGTCAGGAGGACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 24630740 24630754 1.0E-05 AGGTCCTCCTGACCT 15 V_GATA1_09_M02254 TRANSFAC + 24631627 24631637 1.0E-05 TCAGATAAGGG 11 V_HFH1_01_M00129 TRANSFAC - 24631037 24631048 8.0E-06 TATTGTTTACAA 12 V_HNF4_DR1_Q3_M00764 TRANSFAC - 24630733 24630745 1.0E-06 TGACCTTTGCCTA 13 V_STAT4_Q5_M02117 TRANSFAC + 24630411 24630420 7.0E-06 TTCTGGGAAA 10 V_ISGF3G_03_M02771 TRANSFAC + 24630436 24630450 1.0E-06 GAGAACTGAAACTTA 15 V_PPARA_02_M00518 TRANSFAC + 24630616 24630634 5.0E-06 GGGGGTCCTAGGGGTCGCT 19 V_SP3_Q3_M00665 TRANSFAC - 24630827 24630840 3.0E-06 AGAAGTGGGCAGGG 14 V_CTCF_02_M01259 TRANSFAC - 24630365 24630384 0.0E+00 TGGCGGCCACTAGAGGGCAG 20 V_STAT3_03_M01595 TRANSFAC + 24630409 24630424 1.0E-06 ATTTCTGGGAAAAGGC 16 V_NR1B1_Q6_M02110 TRANSFAC + 24630738 24630747 9.0E-06 AAAGGTCAGG 10 V_CTCF_01_M01200 TRANSFAC - 24630363 24630382 0.0E+00 GCGGCCACTAGAGGGCAGCA 20 V_ICSBP_Q6_M00699 TRANSFAC + 24631685 24631696 1.0E-05 AAAATGAAAATG 12 V_FREAC2_01_M00290 TRANSFAC + 24631034 24631049 2.0E-06 CTTTTGTAAACAATAC 16 V_USF_Q6_01_M00796 TRANSFAC + 24630400 24630411 7.0E-06 GACCACGTGATT 12 V_SOX15_03_M02799 TRANSFAC + 24631037 24631053 1.0E-06 TTGTAAACAATACATCT 17 V_AP4_01_M00005 TRANSFAC - 24630287 24630304 4.0E-06 TGGCTCAGCTCCAGCCTG 18 V_TCFE2A_03_M02823 TRANSFAC + 24630156 24630172 4.0E-06 ATGCACAGGTGTACACA 17 V_GATA1_04_M00128 TRANSFAC + 24631626 24631638 2.0E-06 TTCAGATAAGGGA 13 V_DR1_Q3_M00762 TRANSFAC + 24630733 24630745 4.0E-06 TAGGCAAAGGTCA 13 V_MAX_01_M00119 TRANSFAC + 24630399 24630412 0.0E+00 AGACCACGTGATTT 14 V_MAX_01_M00119 TRANSFAC - 24630399 24630412 0.0E+00 AAATCACGTGGTCT 14 V_FOXL1_04_M02753 TRANSFAC + 24631034 24631050 1.0E-06 CTTTTGTAAACAATACA 17 V_DELTAEF1_01_M00073 TRANSFAC - 24631529 24631539 9.0E-06 TTTCACCTTGA 11 V_HNF4_Q6_01_M01031 TRANSFAC + 24630733 24630746 9.0E-06 TAGGCAAAGGTCAG 14 V_FOXO3_01_M00477 TRANSFAC - 24631036 24631049 3.0E-06 GTATTGTTTACAAA 14 V_STAT1STAT1_Q3_M01212 TRANSFAC - 24630409 24630421 2.0E-06 TTTTCCCAGAAAT 13 V_LMO2COM_02_M00278 TRANSFAC + 24631628 24631636 3.0E-06 CAGATAAGG 9 V_NFAT2_02_M01749 TRANSFAC + 24631472 24631482 3.0E-06 TTCCCTGGAAA 11 V_ZFP281_01_M01597 TRANSFAC + 24630895 24630905 5.0E-06 AGGGGGTGGGG 11 V_OCT1_06_M00162 TRANSFAC - 24631685 24631698 5.0E-06 CACATTTTCATTTT 14 V_SOX21_04_M02907 TRANSFAC - 24631036 24631052 4.0E-06 GATGTATTGTTTACAAA 17 V_IRF1_Q6_01_M01881 TRANSFAC - 24630436 24630449 5.0E-06 AAGTTTCAGTTCTC 14 V_IRF1_Q6_01_M01881 TRANSFAC - 24631683 24631696 2.0E-06 CATTTTCATTTTGT 14 V_SOX8_03_M02808 TRANSFAC - 24631037 24631053 1.0E-06 AGATGTATTGTTTACAA 17 V_STAT5A_01_M00457 TRANSFAC + 24630408 24630422 7.0E-06 GATTTCTGGGAAAAG 15 V_NUR77_Q5_M01217 TRANSFAC - 24630737 24630746 7.0E-06 CTGACCTTTG 10 V_PIT1_Q6_M00802 TRANSFAC + 24631030 24631047 8.0E-06 AATTCTTTTGTAAACAAT 18 V_SRY_05_M02917 TRANSFAC + 24631036 24631052 1.0E-06 TTTGTAAACAATACATC 17 V_FREAC4_01_M00292 TRANSFAC + 24631034 24631049 5.0E-06 CTTTTGTAAACAATAC 16 V_GATA1_02_M00126 TRANSFAC + 24631625 24631638 6.0E-06 TTTCAGATAAGGGA 14 V_COUP_DR1_Q6_M00765 TRANSFAC - 24630733 24630745 2.0E-06 TGACCTTTGCCTA 13 V_STAT1_Q6_M01823 TRANSFAC + 24630411 24630420 2.0E-06 TTCTGGGAAA 10 V_ARID5A_04_M02840 TRANSFAC - 24630098 24630114 7.0E-06 CTTCAAATACCAGTCAA 17 V_STAT1_05_M01260 TRANSFAC + 24630408 24630429 2.0E-06 GATTTCTGGGAAAAGGCCCTCC 22 V_FOXK1_03_M02752 TRANSFAC + 24631034 24631050 2.0E-06 CTTTTGTAAACAATACA 17 V_ESR2_01_M02377 TRANSFAC + 24630738 24630755 1.0E-06 AAAGGTCAGGAGGACCTA 18 V_OCT4_01_M01125 TRANSFAC + 24631030 24631044 4.0E-06 AATTCTTTTGTAAAC 15 V_HSF1_Q6_01_M02017 TRANSFAC + 24630406 24630419 9.0E-06 GTGATTTCTGGGAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.