Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

AKR1A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10327 aldo-keto reductase family 1, member A1 (aldehyde reductase) chr1 + 46011454 - 46016954 46016454 Transcription Factor Binding Sites   Download all TFBS in the AKR1A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 46011895 46011903 2.0E-06 CTAATAAAA 9 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 46017027 46017035 4.0E-06 GCAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 46017027 46017036 2.0E-06 GCAATAAAAT 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 46017027 46017036 1.0E-06 GCAATAAAAT 10 Creb3l2_bZIP_DBD_dimeric_12_1 SELEX - 46016373 46016384 5.0E-06 TGCCACGTTGCA 12 Tp53_p53l_DBD_dimeric_18_1 SELEX + 46011777 46011794 9.0E-06 ACAGGCAGGTTAGCAGGT 18 SOX9_HMG_full_dimeric_16_1 SELEX + 46018186 46018201 6.0E-06 AGAAATGTGAAGTGCT 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 46018088 46018104 4.0E-06 GGCAACAAAAGGAAACA 17 EWSR1-FLI1_MA0149.1 JASPAR - 46016384 46016401 8.0E-06 GGAAGTAAGGTAGCAGAT 18 EWSR1-FLI1_MA0149.1 JASPAR + 46018175 46018192 9.0E-06 GGAAAGGAGCCAGAAATG 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 46016272 46016289 5.0E-06 AAAGTTCACCTAAGTTGG 18 NR2F1_MA0017.1 JASPAR + 46016282 46016295 9.0E-06 TGAACTTTGGGAAT 14 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 46011894 46011903 9.0E-06 TCTAATAAAA 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 46017026 46017035 2.0E-06 AGCAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 46011895 46011903 7.0E-06 CTAATAAAA 9 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 46017027 46017035 3.0E-06 GCAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 46011895 46011904 7.0E-06 CTAATAAAAG 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 46017027 46017036 3.0E-06 GCAATAAAAT 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 46017026 46017036 1.0E-06 AGCAATAAAAT 11 ELK1_ETS_full_dimeric_17_1 SELEX + 46016395 46016411 1.0E-06 TACTTCCCCCGGAAAAG 17 SP4_C2H2_full_monomeric_17_1 SELEX + 46016466 46016482 2.0E-06 CTGGCCCCGCCCCTTGC 17 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 46017013 46017033 8.0E-06 TTATTGCTGAGGAAACAGGTT 21 MZF1_5-13_MA0057.1 JASPAR - 46016722 46016731 8.0E-06 TGAGGGGGAA 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 46011895 46011904 9.0E-06 CTAATAAAAG 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 46017027 46017036 7.0E-06 GCAATAAAAT 10 Mycn_MA0104.2 JASPAR + 46016487 46016496 8.0E-06 CCCACGTGGC 10 MAFG_bZIP_full_dimeric_21_1 SELEX + 46017013 46017033 9.0E-06 AACCTGTTTCCTCAGCAATAA 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 46017013 46017033 1.0E-05 TTATTGCTGAGGAAACAGGTT 21 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 46016373 46016384 1.0E-06 TGCAACGTGGCA 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX - 46016373 46016384 1.0E-06 TGCCACGTTGCA 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 46011895 46011904 5.0E-06 CTAATAAAAG 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 46017027 46017036 3.0E-06 GCAATAAAAT 10 IRF4_IRF_full_dimeric_15_1 SELEX - 46016949 46016963 7.0E-06 TCAAATCCGAAACCA 15 MAFK_bZIP_full_monomeric_12_1 SELEX - 46017023 46017034 8.0E-06 TTTATTGCTGAG 12 IRF5_IRF_full_dimeric_14_1 SELEX - 46016944 46016957 6.0E-06 CCGAAACCAAGTCT 14 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 46017026 46017036 1.0E-06 AGCAATAAAAT 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 46011895 46011903 9.0E-06 CTAATAAAA 9 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 46017027 46017035 3.0E-06 GCAATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 46017027 46017035 3.0E-06 GCAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 46017026 46017036 1.0E-06 AGCAATAAAAT 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 46017027 46017036 7.0E-06 GCAATAAAAT 10 V_HOXA9_01_M01351 TRANSFAC + 46017024 46017040 5.0E-06 TCAGCAATAAAATGAGG 17 V_TGIF_01_M00418 TRANSFAC + 46017594 46017604 9.0E-06 ACCTGTCAAGA 11 V_STAT5A_Q6_M01890 TRANSFAC + 46011889 46011901 3.0E-06 TGATTTCTAATAA 13 V_AREB6_03_M00414 TRANSFAC + 46018167 46018178 6.0E-06 CTGCACCTGGAA 12 V_GATA3_03_M00351 TRANSFAC - 46016981 46016990 8.0E-06 AGAGATCATA 10 V_SP1_Q6_01_M00931 TRANSFAC - 46016469 46016478 4.0E-06 GGGGCGGGGC 10 V_ZTA_Q2_M00711 TRANSFAC - 46016819 46016831 5.0E-06 TCACCTTGGCACA 13 V_NKX25_Q6_M02108 TRANSFAC - 46018109 46018119 2.0E-06 ATCACTTGAAA 11 V_IRF3_05_M02767 TRANSFAC - 46016949 46016962 5.0E-06 CAAATCCGAAACCA 14 V_E2A_Q2_M00804 TRANSFAC + 46016502 46016515 0.0E+00 CCACCTGCCTCATT 14 V_HOXD13_01_M01404 TRANSFAC + 46011892 46011907 6.0E-06 TTTCTAATAAAAGCTG 16 V_CMYC_02_M01154 TRANSFAC + 46016486 46016497 9.0E-06 GCCCACGTGGCC 12 V_ZFP691_03_M02833 TRANSFAC + 46011857 46011873 3.0E-06 CATTCAGTGCTCCGTCT 17 V_ELF4_04_M02850 TRANSFAC + 46011892 46011908 5.0E-06 TTTCTAATAAAAGCTGC 17 V_GC_01_M00255 TRANSFAC - 46016467 46016480 2.0E-06 AAGGGGCGGGGCCA 14 V_ETV7_01_M02071 TRANSFAC + 46016402 46016411 7.0E-06 CCCGGAAAAG 10 V_MEIS2_01_M01488 TRANSFAC + 46017590 46017605 9.0E-06 CTCAACCTGTCAAGAT 16 V_LMX1_01_M01409 TRANSFAC - 46011890 46011906 7.0E-06 AGCTTTTATTAGAAATC 17 V_COUP_01_M00158 TRANSFAC + 46016282 46016295 9.0E-06 TGAACTTTGGGAAT 14 V_E12_Q6_M00693 TRANSFAC - 46016500 46016510 7.0E-06 GGCAGGTGGCG 11 V_IRX4_01_M01410 TRANSFAC + 46018148 46018164 5.0E-06 AGATTACATGTATGAGC 17 V_NFKB_Q6_M00194 TRANSFAC - 46016715 46016728 5.0E-06 GGGGGAAGTTCCAC 14 V_HOXB9_01_M01426 TRANSFAC + 46017024 46017039 6.0E-06 TCAGCAATAAAATGAG 16 V_SP1_Q6_M00196 TRANSFAC - 46016468 46016480 1.0E-06 AAGGGGCGGGGCC 13 V_CDX2_01_M01449 TRANSFAC + 46017023 46017038 5.0E-06 CTCAGCAATAAAATGA 16 V_CDX2_Q5_M00729 TRANSFAC - 46017026 46017039 5.0E-06 CTCATTTTATTGCT 14 V_ASCL2_03_M02737 TRANSFAC + 46016221 46016237 4.0E-06 TGTTGCAGCTGCTCTCT 17 V_CDX1_01_M01373 TRANSFAC + 46017023 46017038 7.0E-06 CTCAGCAATAAAATGA 16 V_IK2_01_M00087 TRANSFAC + 46016286 46016297 3.0E-06 CTTTGGGAATCC 12 V_AR_04_M01201 TRANSFAC + 46016114 46016128 6.0E-06 GGCACATAACGTGCT 15 V_TAL1BETAE47_01_M00065 TRANSFAC + 46011709 46011724 8.0E-06 CATATCAGATGGTAAC 16 V_ERBETA_Q5_M01875 TRANSFAC + 46011743 46011757 1.0E-06 GTGACACTGACCCAG 15 V_IRF4_03_M02768 TRANSFAC - 46016947 46016961 5.0E-06 AAATCCGAAACCAAG 15 V_KLF7_03_M02773 TRANSFAC + 46016466 46016481 4.0E-06 CTGGCCCCGCCCCTTG 16 V_STAT4_Q5_M02117 TRANSFAC - 46011892 46011901 6.0E-06 TTATTAGAAA 10 V_ISGF3G_03_M02771 TRANSFAC - 46016948 46016962 2.0E-06 CAAATCCGAAACCAA 15 V_MYCN_01_M02259 TRANSFAC + 46016487 46016496 8.0E-06 CCCACGTGGC 10 V_LMO2COM_01_M00277 TRANSFAC + 46018136 46018147 7.0E-06 GCCCAGGTGCTG 12 V_IRX3_01_M01318 TRANSFAC - 46018147 46018163 6.0E-06 CTCATACATGTAATCTC 17 V_IRX3_01_M01318 TRANSFAC + 46018148 46018164 6.0E-06 AGATTACATGTATGAGC 17 V_MZF1_02_M00084 TRANSFAC - 46016722 46016734 9.0E-06 CGGTGAGGGGGAA 13 V_IRX5_01_M01472 TRANSFAC + 46018148 46018164 3.0E-06 AGATTACATGTATGAGC 17 V_NEUROD_02_M01288 TRANSFAC + 46016839 46016850 4.0E-06 TTGCTGCTGGCC 12 V_SP4_Q5_M01273 TRANSFAC + 46016469 46016479 8.0E-06 GCCCCGCCCCT 11 V_ELF1_Q6_M00746 TRANSFAC - 46017559 46017570 4.0E-06 ATTTGAGGAAGT 12 V_IRX3_02_M01485 TRANSFAC + 46018148 46018164 4.0E-06 AGATTACATGTATGAGC 17 V_IRF5_03_M02769 TRANSFAC - 46016948 46016962 4.0E-06 CAAATCCGAAACCAA 15 V_MYOD_Q6_01_M00929 TRANSFAC - 46016497 46016514 5.0E-06 ATGAGGCAGGTGGCGCTG 18 V_TCFE2A_03_M02823 TRANSFAC + 46011785 46011801 2.0E-06 GTTAGCAGGTGCGCACA 17 V_AP1FJ_Q2_M00172 TRANSFAC - 46011911 46011921 9.0E-06 AGTGACTCCAT 11 V_ZSCAN4_04_M02942 TRANSFAC + 46016111 46016126 9.0E-06 CCTGGCACATAACGTG 16 V_HDX_01_M01333 TRANSFAC - 46011884 46011900 7.0E-06 TATTAGAAATCAAGGGA 17 V_TCF7_04_M02921 TRANSFAC - 46011889 46011903 0.0E+00 TTTTATTAGAAATCA 15 V_TBX15_02_M01264 TRANSFAC + 46018332 46018349 8.0E-06 AGGTGGTGAAATGAGAAA 18 V_STAT1STAT1_Q3_M01212 TRANSFAC + 46011891 46011903 3.0E-06 ATTTCTAATAAAA 13 V_MEF3_B_M00319 TRANSFAC + 46018101 46018113 7.0E-06 TGCCCAGGTTTCA 13 V_IRX2_01_M01405 TRANSFAC + 46018148 46018164 3.0E-06 AGATTACATGTATGAGC 17 V_RARA_03_M02787 TRANSFAC - 46016278 46016293 2.0E-06 TCCCAAAGTTCACCTA 16 V_EWSR1FLI1_01_M02252 TRANSFAC - 46016384 46016401 8.0E-06 GGAAGTAAGGTAGCAGAT 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 46018175 46018192 9.0E-06 GGAAAGGAGCCAGAAATG 18 V_VDR_Q3_M00444 TRANSFAC - 46017011 46017025 9.0E-06 GAGGAAACAGGTTCA 15 V_NFE2_Q6_M02104 TRANSFAC + 46011748 46011763 8.0E-06 ACTGACCCAGCACAGC 16 V_SATB1_01_M01232 TRANSFAC - 46011889 46011900 2.0E-06 TATTAGAAATCA 12 V_SP1_Q2_01_M00933 TRANSFAC + 46016470 46016479 7.0E-06 CCCCGCCCCT 10 V_HOXA10_01_M01464 TRANSFAC + 46017024 46017039 3.0E-06 TCAGCAATAAAATGAG 16 V_CMAF_01_M01070 TRANSFAC - 46017016 46017034 7.0E-06 TTTATTGCTGAGGAAACAG 19 V_SP1_Q4_01_M00932 TRANSFAC - 46016468 46016480 0.0E+00 AAGGGGCGGGGCC 13 V_IRXB3_01_M01377 TRANSFAC + 46018148 46018164 7.0E-06 AGATTACATGTATGAGC 17 V_STAT1_05_M01260 TRANSFAC - 46011883 46011904 3.0E-06 CTTTTATTAGAAATCAAGGGAA 22 V_NANOG_02_M01247 TRANSFAC + 46018337 46018356 8.0E-06 GTGAAATGAGAAAGATAGAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.