Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CRISP3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10321 cysteine-rich secretory protein 3 chr6 - 49711650 - 49717168 49712150 Transcription Factor Binding Sites   Download all TFBS in the CRISP3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SPIC_ETS_full_monomeric_14_1 SELEX - 49712138 49712151 2.0E-06 CAAAACAGGAAATA 14 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 49712285 49712296 4.0E-06 TTTAAAAATAAA 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 49712285 49712296 2.0E-06 TTTAAAAATAAA 12 SPIB_ETS_DBD_monomeric_14_1 SELEX - 49712138 49712151 8.0E-06 CAAAACAGGAAATA 14 ETV2_ETS_DBD_monomeric_11_1 SELEX - 49712138 49712148 2.0E-06 AACAGGAAATA 11 MEF2A_MA0052.1 JASPAR - 49712286 49712295 7.0E-06 TTATTTTTAA 10 FOXI1_MA0042.1 JASPAR + 49712066 49712077 6.0E-06 AAGTATTTGTTT 12 NFATC1_NFAT_full_dimeric_20_1 SELEX - 49712128 49712147 9.0E-06 ACAGGAAATAGGTGTTTCAT 20 FEV_MA0156.1 JASPAR - 49712139 49712146 1.0E-05 CAGGAAAT 8 ELF5_ETS_full_monomeric_11_1 SELEX - 49712138 49712148 9.0E-06 AACAGGAAATA 11 V_DBX1_01_M01483 TRANSFAC - 49712283 49712299 1.0E-06 CAATTTATTTTTAAAAG 17 V_APOLYA_B_M00310 TRANSFAC + 49712128 49712142 2.0E-06 ATGAAACACCTATTT 15 V_APOLYA_B_M00310 TRANSFAC + 49712291 49712305 4.0E-06 AATAAATTGCTATAT 15 V_CEBP_Q3_M00770 TRANSFAC + 49712307 49712318 1.0E-06 AAGTTTTGTAAT 12 V_HMGIY_Q3_M01010 TRANSFAC - 49712289 49712303 3.0E-06 ATAGCAATTTATTTT 15 V_BCL6_01_M01183 TRANSFAC + 49712239 49712254 7.0E-06 TTTCTAGTCATGATTT 16 V_ETS_B_M00340 TRANSFAC - 49712135 49712148 1.0E-06 AACAGGAAATAGGT 14 V_ESE1_01_M01977 TRANSFAC - 49712138 49712147 8.0E-06 ACAGGAAATA 10 V_MAFB_03_M02879 TRANSFAC - 49712248 49712262 7.0E-06 TAATTTCAAAATCAT 15 V_MEF2_02_M00231 TRANSFAC + 49712279 49712300 1.0E-05 ATGGCTTTTAAAAATAAATTGC 22 V_CEBP_01_M00159 TRANSFAC + 49712261 49712273 7.0E-06 TATTTGGTGATTC 13 V_FOXO3A_Q1_M01137 TRANSFAC + 49712287 49712298 1.0E-06 TAAAAATAAATT 12 V_PU1_Q4_M01172 TRANSFAC + 49712132 49712150 0.0E+00 AACACCTATTTCCTGTTTT 19 V_MEF2A_Q6_M02024 TRANSFAC - 49712285 49712294 1.0E-06 TATTTTTAAA 10 V_CETS1P54_02_M00074 TRANSFAC - 49712137 49712149 6.0E-06 AAACAGGAAATAG 13 V_ETS_Q4_M00771 TRANSFAC + 49712135 49712146 1.0E-05 ACCTATTTCCTG 12 V_ELF4_04_M02850 TRANSFAC + 49712282 49712298 3.0E-06 GCTTTTAAAAATAAATT 17 V_ELF4_04_M02850 TRANSFAC + 49712284 49712300 1.0E-06 TTTTAAAAATAAATTGC 17 V_CEBPE_Q6_M01868 TRANSFAC - 49712251 49712264 2.0E-06 AATAATTTCAAAAT 14 V_RSRFC4_Q2_M00407 TRANSFAC + 49712283 49712299 0.0E+00 CTTTTAAAAATAAATTG 17 V_EVI1_01_M00078 TRANSFAC + 49712106 49712121 6.0E-06 AGAGAAGGTTAGAGCC 16 V_MEF2_03_M00232 TRANSFAC + 49712279 49712300 7.0E-06 ATGGCTTTTAAAAATAAATTGC 22 V_ELF5_01_M01197 TRANSFAC - 49712138 49712148 3.0E-06 AACAGGAAATA 11 V_TCF7_03_M02817 TRANSFAC - 49712069 49712085 7.0E-06 AATAGATGAAACAAATA 17 V_MEF2_Q6_01_M00941 TRANSFAC - 49712286 49712297 3.0E-06 ATTTATTTTTAA 12 V_NCX_02_M01420 TRANSFAC + 49712286 49712302 4.0E-06 TTAAAAATAAATTGCTA 17 V_CETS1P54_01_M00032 TRANSFAC - 49712138 49712147 1.0E-05 ACAGGAAATA 10 V_TBP_06_M02814 TRANSFAC + 49712283 49712298 5.0E-06 CTTTTAAAAATAAATT 16 V_CETS1P54_03_M01078 TRANSFAC - 49712135 49712150 4.0E-06 AAAACAGGAAATAGGT 16 V_ELF1_Q6_M00746 TRANSFAC - 49712139 49712150 1.0E-06 AAAACAGGAAAT 12 V_MTF1_06_M02882 TRANSFAC - 49712071 49712084 9.0E-06 ATAGATGAAACAAA 14 V_MTF1_06_M02882 TRANSFAC + 49712124 49712137 3.0E-06 ATATATGAAACACC 14 V_CEBPA_01_M00116 TRANSFAC - 49712145 49712158 7.0E-06 AATTTGCCAAAACA 14 V_CEBPA_01_M00116 TRANSFAC - 49712307 49712320 9.0E-06 CAATTACAAAACTT 14 V_HDX_01_M01333 TRANSFAC - 49712244 49712260 7.0E-06 ATTTCAAAATCATGACT 17 V_RSRFC4_01_M00026 TRANSFAC - 49712283 49712298 1.0E-06 AATTTATTTTTAAAAG 16 V_PLZF_02_M01075 TRANSFAC + 49712275 49712303 9.0E-06 TCAAATGGCTTTTAAAAATAAATTGCTAT 29 V_SRF_06_M02916 TRANSFAC + 49712283 49712299 4.0E-06 CTTTTAAAAATAAATTG 17 V_SATB1_01_M01232 TRANSFAC + 49712284 49712295 6.0E-06 TTTTAAAAATAA 12 V_HOXD8_01_M01432 TRANSFAC + 49712286 49712302 4.0E-06 TTAAAAATAAATTGCTA 17 V_SOX15_04_M02903 TRANSFAC - 49712221 49712235 2.0E-06 AGCAATGAAATTTGA 15 V_MEF2_01_M00006 TRANSFAC + 49712284 49712299 1.0E-06 TTTTAAAAATAAATTG 16 V_HMEF2_Q6_M00406 TRANSFAC + 49712284 49712299 1.0E-05 TTTTAAAAATAAATTG 16 V_CEBP_Q2_01_M00912 TRANSFAC - 49712249 49712260 6.0E-06 ATTTCAAAATCA 12 V_CEBP_Q2_01_M00912 TRANSFAC - 49712307 49712318 3.0E-06 ATTACAAAACTT 12 V_FEV_01_M02269 TRANSFAC - 49712139 49712146 1.0E-05 CAGGAAAT 8 V_GLIS2_04_M02863 TRANSFAC - 49712283 49712296 3.0E-06 TTTATTTTTAAAAG 14 V_PPARA_01_M00242 TRANSFAC - 49712133 49712152 0.0E+00 CCAAAACAGGAAATAGGTGT 20 V_CEBPA_Q6_M01866 TRANSFAC + 49712249 49712261 7.0E-06 TGATTTTGAAATT 13 V_CEBPA_Q6_M01866 TRANSFAC + 49712307 49712319 2.0E-06 AAGTTTTGTAATT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.