Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PDZK1IP1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10158 PDZK1 interacting protein 1 chr1 - 47655271 - 47660771 47655771 Transcription Factor Binding Sites   Download all TFBS in the PDZK1IP1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 47658736 47658754 0.0E+00 CTGCCAGCAGGTGGCAGTG 19 SP8_C2H2_DBD_monomeric_12_1 SELEX - 47656025 47656036 5.0E-06 GCCCCGCCCACT 12 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 47656056 47656064 5.0E-06 CTTAATCCC 9 MYBL2_MYB_DBD_dimeric_16_1 SELEX + 47660187 47660202 6.0E-06 ACAGTTAGAGCTGTTC 16 MYF6_bHLH_full_dimeric_10_1 SELEX + 47658541 47658550 9.0E-06 AGCAGCTGTT 10 HSF1_HSF_full_trimeric_13_1 SELEX - 47658802 47658814 9.0E-06 TTGCAGAATCTTC 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 47657365 47657377 5.0E-06 ATTTAACAAACAT 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 47657434 47657445 4.0E-06 TGTTTTCCCAAA 12 EWSR1-FLI1_MA0149.1 JASPAR + 47655718 47655735 6.0E-06 GGAGAGGAGCTAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 47657237 47657254 8.0E-06 GGAGGGAGGCCAGGATAT 18 EWSR1-FLI1_MA0149.1 JASPAR + 47658981 47658998 7.0E-06 GGAGGTAATGCAGGCAAA 18 STAT1_MA0137.2 JASPAR - 47656034 47656048 9.0E-06 GCCTTCCAAGAAGCC 15 PITX1_homeodomain_full_monomeric_8_1 SELEX - 47656056 47656063 1.0E-05 TTAATCCC 8 TEAD1_TEA_full_monomeric_10_1 SELEX - 47657341 47657350 3.0E-06 TACATTCCAA 10 ETV2_ETS_DBD_monomeric_11_1 SELEX - 47656153 47656163 2.0E-06 AACAGGAAATA 11 REL_MA0101.1 JASPAR - 47656093 47656102 9.0E-06 GGGGTTTTCC 10 RFX2_RFX_DBD_dimeric_15_1 SELEX + 47658957 47658971 5.0E-06 CATTGCTAAGGAAGG 15 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 47658541 47658550 3.0E-06 AGCAGCTGTT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 47658541 47658550 1.0E-06 AACAGCTGCT 10 znf143_MA0088.1 JASPAR - 47658966 47658985 9.0E-06 CCTCCTCCAGGATGCCTTCC 20 SP4_C2H2_full_monomeric_17_1 SELEX - 47656023 47656039 1.0E-06 GAAGCCCCGCCCACTGG 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 47656026 47656036 1.0E-05 GCCCCGCCCAC 11 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 47657342 47657358 0.0E+00 CCATTCCTTACATTCCA 17 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 47656056 47656063 1.0E-05 TTAATCCC 8 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 47657342 47657349 1.0E-05 ACATTCCA 8 Stat3_MA0144.1 JASPAR - 47655956 47655965 7.0E-06 TGCCAGGAAA 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 47657181 47657191 6.0E-06 CTCAAGGTGAT 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 47657462 47657476 5.0E-06 GGAGAGTGAAAGGGG 15 FEV_MA0156.1 JASPAR - 47656154 47656161 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR - 47657306 47657320 1.0E-05 CATTAACATGCACAG 15 Pou5f1_MA0142.1 JASPAR + 47658881 47658895 0.0E+00 CATTGACATGTAAAT 15 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 47658563 47658578 7.0E-06 ACAGGAAGGAGGAACT 16 ELF5_ETS_full_monomeric_11_1 SELEX - 47656153 47656163 9.0E-06 AACAGGAAATA 11 TEAD1_TEA_full_dimeric_17_1 SELEX - 47657342 47657358 0.0E+00 CCATTCCTTACATTCCA 17 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 47657341 47657350 8.0E-06 TACATTCCAA 10 Sox2_MA0143.1 JASPAR + 47658880 47658894 5.0E-06 ACATTGACATGTAAA 15 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 47657227 47657240 8.0E-06 ATATACATGTTTGG 14 MSC_bHLH_full_dimeric_10_1 SELEX - 47658541 47658550 4.0E-06 AACAGCTGCT 10 RREB1_MA0073.1 JASPAR - 47657109 47657128 7.0E-06 CACACACACACCCACACACA 20 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 47658882 47658893 3.0E-06 TTACATGTCAAT 12 V_MEQ_01_M02049 TRANSFAC - 47657126 47657134 7.0E-06 AACACACAC 9 V_HSF2_01_M00147 TRANSFAC + 47657276 47657285 4.0E-06 AGAATCTTCT 10 V_HSF2_01_M00147 TRANSFAC - 47657276 47657285 8.0E-06 AGAAGATTCT 10 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 47658884 47658897 3.0E-06 TGACATGTAAATAG 14 V_NFKB_C_M00208 TRANSFAC - 47655917 47655928 7.0E-06 TGGGACTCTCCC 12 V_BCL6_Q3_01_M02085 TRANSFAC - 47656037 47656046 7.0E-06 CTTCCAAGAA 10 V_FLI1_Q6_M01208 TRANSFAC + 47657548 47657558 8.0E-06 CAGGAAGTGCC 11 V_AHR_Q5_M00778 TRANSFAC - 47658590 47658600 6.0E-06 TTTGCGTGACA 11 V_AHRARNT_01_M00235 TRANSFAC - 47658590 47658605 9.0E-06 ATGGTTTTGCGTGACA 16 V_OBOX1_01_M01450 TRANSFAC + 47656051 47656067 9.0E-06 ACAGTGGGATTAAGAAA 17 V_ERR3_Q2_01_M02094 TRANSFAC + 47655858 47655870 9.0E-06 ATTCGAGGTCATC 13 V_ETS_B_M00340 TRANSFAC - 47656150 47656163 1.0E-05 AACAGGAAATAGGC 14 V_STAT_Q6_M00777 TRANSFAC - 47657392 47657404 5.0E-06 TAAAATTCTTGGA 13 V_ESE1_01_M01977 TRANSFAC - 47656153 47656162 8.0E-06 ACAGGAAATA 10 V_POU5F1_02_M02245 TRANSFAC - 47657306 47657320 1.0E-05 CATTAACATGCACAG 15 V_POU5F1_02_M02245 TRANSFAC + 47658881 47658895 0.0E+00 CATTGACATGTAAAT 15 V_HOXA4_01_M01370 TRANSFAC - 47657311 47657327 5.0E-06 GGCTGTTCATTAACATG 17 V_CEBP_01_M00159 TRANSFAC - 47657364 47657376 2.0E-06 TGTTTGTTAAATT 13 V_P53_DECAMER_Q2_M00761 TRANSFAC + 47658616 47658625 4.0E-06 AGACAAGCCC 10 V_SPZ1_01_M00446 TRANSFAC + 47655888 47655902 8.0E-06 GGAGGTGGGTATGAG 15 V_E2A_Q2_M00804 TRANSFAC + 47656171 47656184 4.0E-06 CCACCTGCCCCTGC 14 V_PU1_Q4_M01172 TRANSFAC + 47658556 47658574 1.0E-06 GACGTTCAGTTCCTCCTTC 19 V_LYF1_01_M00141 TRANSFAC + 47657434 47657442 9.0E-06 TTTGGGAAA 9 V_AP4_Q6_01_M00927 TRANSFAC - 47658542 47658550 1.0E-05 AACAGCTGC 9 V_LDSPOLYA_B_M00317 TRANSFAC + 47657125 47657140 6.0E-06 TGTGTGTGTTCACATG 16 V_CEBPB_01_M00109 TRANSFAC + 47656057 47656070 0.0E+00 GGATTAAGAAATGT 14 V_STAT4_Q4_M01666 TRANSFAC - 47656032 47656045 3.0E-06 TTCCAAGAAGCCCC 14 V_GC_01_M00255 TRANSFAC + 47656025 47656038 0.0E+00 AGTGGGCGGGGCTT 14 V_CRX_Q4_M00623 TRANSFAC - 47656054 47656066 1.0E-06 TTCTTAATCCCAC 13 V_IPF1_Q4_M00436 TRANSFAC + 47657312 47657323 1.0E-05 ATGTTAATGAAC 12 V_HNF3G_Q4_M02015 TRANSFAC - 47657369 47657376 7.0E-06 TGTTTGTT 8 V_CREL_01_M00053 TRANSFAC - 47656093 47656102 9.0E-06 GGGGTTTTCC 10 V_E12_Q6_M00693 TRANSFAC + 47658741 47658751 8.0E-06 AGCAGGTGGCA 11 V_IRF2_01_M00063 TRANSFAC + 47658660 47658672 2.0E-06 GAAAAGCCAAAGT 13 V_CEBPD_Q6_M00621 TRANSFAC - 47656058 47656069 5.0E-06 CATTTCTTAATC 12 V_IRX4_01_M01410 TRANSFAC - 47658880 47658896 2.0E-06 TATTTACATGTCAATGT 17 V_SP1_Q6_M00196 TRANSFAC + 47656025 47656037 2.0E-06 AGTGGGCGGGGCT 13 V_IRF3_Q3_M01279 TRANSFAC + 47657423 47657435 4.0E-06 TTAGTTTTGCGTT 13 V_EVI1_01_M00078 TRANSFAC + 47660160 47660175 2.0E-06 GGAGAAGACAAGGCAA 16 V_E47_02_M00071 TRANSFAC + 47658538 47658553 5.0E-06 CTGAGCAGCTGTTCCA 16 V_OCT1_05_M00161 TRANSFAC - 47657475 47657488 6.0E-06 AGCCTTTGCATGCC 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 47657366 47657376 8.0E-06 TGTTTGTTAAA 11 V_OBOX2_01_M01364 TRANSFAC + 47656051 47656067 6.0E-06 ACAGTGGGATTAAGAAA 17 V_ASCL2_03_M02737 TRANSFAC - 47658537 47658553 8.0E-06 TGGAACAGCTGCTCAGG 17 V_ASCL2_03_M02737 TRANSFAC + 47658538 47658554 4.0E-06 CTGAGCAGCTGTTCCAT 17 V_ELF5_01_M01197 TRANSFAC - 47656153 47656163 3.0E-06 AACAGGAAATA 11 V_IK2_01_M00087 TRANSFAC + 47657433 47657444 0.0E+00 GTTTGGGAAAAC 12 V_CETS1P54_01_M00032 TRANSFAC - 47656153 47656162 1.0E-05 ACAGGAAATA 10 V_PPARA_02_M00518 TRANSFAC - 47655930 47655948 1.0E-06 TCAGGGCATGGAGGTGAGG 19 V_CTCF_02_M01259 TRANSFAC + 47658733 47658752 0.0E+00 TCACTGCCAGCAGGTGGCAG 20 V_STAT3_03_M01595 TRANSFAC - 47655952 47655967 1.0E-06 ACTGCCAGGAAAAGGG 16 V_IRX3_01_M01318 TRANSFAC - 47658880 47658896 5.0E-06 TATTTACATGTCAATGT 17 V_OCT4_02_M01124 TRANSFAC + 47658882 47658896 0.0E+00 ATTGACATGTAAATA 15 V_CTCF_01_M01200 TRANSFAC + 47658735 47658754 0.0E+00 ACTGCCAGCAGGTGGCAGTG 20 V_BLIMP1_Q6_M01066 TRANSFAC + 47657461 47657476 3.0E-06 TGGAGAGTGAAAGGGG 16 V_IRX5_01_M01472 TRANSFAC - 47657225 47657241 8.0E-06 GATATACATGTTTGGGA 17 V_IRX5_01_M01472 TRANSFAC - 47658880 47658896 1.0E-06 TATTTACATGTCAATGT 17 V_ELK1_01_M00007 TRANSFAC + 47657544 47657559 9.0E-06 TGGGCAGGAAGTGCCC 16 V_HOXB4_01_M01424 TRANSFAC + 47657311 47657327 9.0E-06 CATGTTAATGAACAGCC 17 V_SP4_Q5_M01273 TRANSFAC - 47656026 47656036 9.0E-06 GCCCCGCCCAC 11 V_ELF1_Q6_M00746 TRANSFAC - 47656154 47656165 1.0E-06 AGAACAGGAAAT 12 V_IRX3_02_M01485 TRANSFAC - 47658880 47658896 4.0E-06 TATTTACATGTCAATGT 17 V_ZFP187_04_M02934 TRANSFAC - 47660265 47660280 5.0E-06 GTGACCTGGTCCATGG 16 V_MYOD_Q6_02_M02100 TRANSFAC + 47658586 47658594 4.0E-06 CAGCTGTCA 9 V_ALPHACP1_01_M00687 TRANSFAC + 47660278 47660288 7.0E-06 CACCCAATGAG 11 V_OBOX2_02_M03064 TRANSFAC + 47656051 47656067 6.0E-06 ACAGTGGGATTAAGAAA 17 V_MRG2_01_M01395 TRANSFAC - 47658880 47658895 9.0E-06 ATTTACATGTCAATGT 16 V_MYOD_Q6_01_M00929 TRANSFAC - 47656166 47656183 4.0E-06 CAGGGGCAGGTGGTGGGG 18 V_PITX1_01_M01484 TRANSFAC + 47656051 47656067 4.0E-06 ACAGTGGGATTAAGAAA 17 V_MYB_Q5_01_M00913 TRANSFAC - 47660185 47660193 4.0E-06 TAACTGTCA 9 V_FPM315_01_M01587 TRANSFAC - 47658375 47658386 1.0E-06 CAGGGAGGAGGG 12 V_OCT1_06_M00162 TRANSFAC + 47658879 47658892 1.0E-05 GACATTGACATGTA 14 V_IRX2_01_M01405 TRANSFAC - 47657225 47657241 6.0E-06 GATATACATGTTTGGGA 17 V_IRX2_01_M01405 TRANSFAC - 47658880 47658896 2.0E-06 TATTTACATGTCAATGT 17 V_HSF_Q6_M00641 TRANSFAC + 47658686 47658698 8.0E-06 TTCCAGCAGTCTC 13 V_SOX2_01_M02246 TRANSFAC + 47658880 47658894 5.0E-06 ACATTGACATGTAAA 15 V_HFH3_01_M00289 TRANSFAC - 47657367 47657379 6.0E-06 AGATGTTTGTTAA 13 V_EWSR1FLI1_01_M02252 TRANSFAC + 47655718 47655735 6.0E-06 GGAGAGGAGCTAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 47657237 47657254 8.0E-06 GGAGGGAGGCCAGGATAT 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 47658981 47658998 7.0E-06 GGAGGTAATGCAGGCAAA 18 V_VDR_Q3_M00444 TRANSFAC + 47655744 47655758 7.0E-06 GAGGGAGGGAGGAGA 15 V_SOX18_04_M02905 TRANSFAC + 47657358 47657373 3.0E-06 GGGCTGAATTTAACAA 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 47656177 47656190 2.0E-06 GGCGGGGCAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 47656025 47656037 1.0E-06 AGTGGGCGGGGCT 13 V_IRXB3_01_M01377 TRANSFAC - 47658880 47658896 1.0E-06 TATTTACATGTCAATGT 17 V_OBOX3_02_M03065 TRANSFAC + 47656051 47656067 2.0E-06 ACAGTGGGATTAAGAAA 17 V_FEV_01_M02269 TRANSFAC - 47656154 47656161 1.0E-05 CAGGAAAT 8 V_CEBPG_Q6_01_M01869 TRANSFAC + 47656058 47656069 5.0E-06 GATTAAGAAATG 12 V_OBOX3_01_M01466 TRANSFAC + 47656051 47656067 2.0E-06 ACAGTGGGATTAAGAAA 17 V_RFX1_02_M00281 TRANSFAC + 47658439 47658456 5.0E-06 TGATCCCCATGGTAACAA 18 V_RFX1_02_M00281 TRANSFAC + 47660161 47660178 9.0E-06 GAGAAGACAAGGCAACCA 18 V_OCT4_01_M01125 TRANSFAC + 47658881 47658895 0.0E+00 CATTGACATGTAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.