Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LRPPRC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10128 leucine-rich pentatricopeptide repeat containing chr2 - 44222644 - 44228144 44223144 Transcription Factor Binding Sites   Download all TFBS in the LRPPRC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 44223264 44223281 4.0E-06 TATGTAAATATTACATTG 18 PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 44224424 44224432 8.0E-06 GTTAATCCC 9 Foxa2_MA0047.2 JASPAR + 44223272 44223283 4.0E-06 TATTTACATAAA 12 SRY_HMG_DBD_dimeric_15_1 SELEX - 44223758 44223772 8.0E-06 AACTATAGGATTTTT 15 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 44223270 44223281 1.0E-06 TATGTAAATATT 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 44223273 44223281 3.0E-06 TATGTAAAT 9 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 44223271 44223281 0.0E+00 TATGTAAATAT 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 44223273 44223281 4.0E-06 TATGTAAAT 9 CUX1_CUT_DBD_dimeric_17_1 SELEX - 44223292 44223308 7.0E-06 TTCGATAATGAATCAAG 17 POU1F1_POU_DBD_monomeric_14_1 SELEX - 44223270 44223283 8.0E-06 TTTATGTAAATATT 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 44223272 44223282 2.0E-06 TTATGTAAATA 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 44223273 44223281 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 44223273 44223281 5.0E-06 TATGTAAAT 9 Pax4_MA0068.1 JASPAR + 44223738 44223767 7.0E-06 GAAAATAAATGAATTCTACCAAAAATCCTA 30 Pax4_MA0068.1 JASPAR + 44223739 44223768 1.0E-05 AAAATAAATGAATTCTACCAAAAATCCTAT 30 ZNF238_C2H2_full_monomeric_13_1 SELEX + 44223518 44223530 5.0E-06 AGTGCAGATGTTG 13 PITX1_homeodomain_full_monomeric_8_1 SELEX + 44224425 44224432 1.0E-05 TTAATCCC 8 POU3F3_POU_DBD_monomeric_13_1 SELEX - 44223271 44223283 1.0E-06 TTTATGTAAATAT 13 SP1_MA0079.2 JASPAR + 44223507 44223516 7.0E-06 CCCCGCCCCC 10 SRY_MA0084.1 JASPAR - 44223212 44223220 7.0E-06 TAAAACAAT 9 Gata1_MA0035.2 JASPAR - 44224415 44224425 5.0E-06 ACTGATAAGGA 11 Gata1_MA0035.2 JASPAR - 44224439 44224449 5.0E-06 ACTGATAAGGA 11 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 44224425 44224432 1.0E-05 TTAATCCC 8 POU3F1_POU_DBD_monomeric_12_1 SELEX - 44223271 44223282 1.0E-06 TTATGTAAATAT 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 44223316 44223331 6.0E-06 GACGGAAGACGGAAAA 16 POU2F1_POU_DBD_monomeric_12_1 SELEX - 44223272 44223283 2.0E-06 TTTATGTAAATA 12 FOXB1_forkhead_full_monomeric_9_1 SELEX - 44223271 44223279 5.0E-06 TGTAAATAT 9 IRF3_IRF_full_trimeric_21_1 SELEX - 44223308 44223328 5.0E-06 GGAAGACGGAAAAGAAAAGCT 21 POU3F2_POU_DBD_monomeric_12_1 SELEX - 44223271 44223282 2.0E-06 TTATGTAAATAT 12 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 44223271 44223281 0.0E+00 TATGTAAATAT 11 V_HNF3B_01_M00131 TRANSFAC + 44223267 44223281 0.0E+00 TGTAATATTTACATA 15 V_TST1_02_M01316 TRANSFAC + 44223737 44223753 7.0E-06 AGAAAATAAATGAATTC 17 V_DBX1_01_M01483 TRANSFAC + 44223736 44223752 8.0E-06 TAGAAAATAAATGAATT 17 V_FREAC7_01_M00293 TRANSFAC - 44223268 44223283 4.0E-06 TTTATGTAAATATTAC 16 V_FREAC7_01_M00293 TRANSFAC + 44223274 44223289 7.0E-06 TTTACATAAACGATGT 16 V_GATA1_Q6_M02004 TRANSFAC - 44224414 44224428 4.0E-06 TTAACTGATAAGGAG 15 V_TCFE2A_04_M02927 TRANSFAC + 44223517 44223533 8.0E-06 GAGTGCAGATGTTGCTG 17 V_XFD1_01_M00267 TRANSFAC - 44223268 44223281 0.0E+00 TATGTAAATATTAC 14 V_FOXA2_04_M02749 TRANSFAC - 44223267 44223283 1.0E-06 TTTATGTAAATATTACA 17 V_OBOX1_01_M01450 TRANSFAC - 44224421 44224437 5.0E-06 TTCGTGGGATTAACTGA 17 V_MYB_03_M02883 TRANSFAC + 44223171 44223186 0.0E+00 AGACCAACTGCCGGGC 16 V_CBF_02_M01080 TRANSFAC - 44223141 44223156 7.0E-06 TACCCTGCGGTCACAT 16 V_OCT1_Q5_01_M00930 TRANSFAC + 44223271 44223281 5.0E-06 ATATTTACATA 11 V_ISL2_01_M01328 TRANSFAC - 44223740 44223755 1.0E-05 TAGAATTCATTTATTT 16 V_RP58_01_M00532 TRANSFAC - 44223520 44223531 9.0E-06 GCAACATCTGCA 12 V_OCT1_01_M00135 TRANSFAC - 44223268 44223286 2.0E-06 TCGTTTATGTAAATATTAC 19 V_POU2F3_01_M01476 TRANSFAC - 44223269 44223284 2.0E-06 GTTTATGTAAATATTA 16 V_POU3F2_02_M00464 TRANSFAC - 44223273 44223282 9.0E-06 TTATGTAAAT 10 V_SP1_03_M02281 TRANSFAC + 44223507 44223516 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 44223739 44223751 7.0E-06 ATTCATTTATTTT 13 V_SP1_02_M01303 TRANSFAC + 44222826 44222836 3.0E-06 GGGGCGGGGAG 11 V_COUPTF_Q6_M01036 TRANSFAC + 44223613 44223635 9.0E-06 TCTTTTGCACCTTGCCGTTTGCC 23 V_HNF4A_04_M02764 TRANSFAC + 44223389 44223405 7.0E-06 CGCAAGAGGTCAACTCC 17 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 44223703 44223718 7.0E-06 CGCGCTTAGGGTGGGG 16 V_ATF4_Q2_M00514 TRANSFAC + 44223546 44223557 1.0E-06 CCTGACGCCATG 12 V_ZFP691_03_M02833 TRANSFAC + 44220754 44220770 0.0E+00 TATACAGTGCTCAGAGT 17 V_TCFAP2E_04_M02926 TRANSFAC + 44223438 44223451 2.0E-06 AACTAGTAAAAATA 14 V_MYBL1_04_M02884 TRANSFAC + 44223171 44223185 1.0E-06 AGACCAACTGCCGGG 15 V_TAL1_GATA1_01_M02243 TRANSFAC - 44224417 44224434 1.0E-06 GTGGGATTAACTGATAAG 18 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 44222737 44222751 6.0E-06 GAAGGTCACGGCTGT 15 V_DBP_Q6_01_M01872 TRANSFAC - 44223275 44223282 5.0E-06 TTATGTAA 8 V_DBX2_01_M01360 TRANSFAC + 44223738 44223753 4.0E-06 GAAAATAAATGAATTC 16 V_HOXB13_01_M01467 TRANSFAC + 44223437 44223452 4.0E-06 CAACTAGTAAAAATAC 16 V_ARID5A_03_M02736 TRANSFAC + 44223268 44223281 2.0E-06 GTAATATTTACATA 14 V_TEF_Q6_M00672 TRANSFAC + 44223271 44223282 0.0E+00 ATATTTACATAA 12 V_KROX_Q6_M00982 TRANSFAC - 44222697 44222710 9.0E-06 CCTGCCCCCGCCAC 14 V_HNF3A_01_M01261 TRANSFAC - 44223271 44223280 7.0E-06 ATGTAAATAT 10 V_OBOX2_01_M01364 TRANSFAC - 44224421 44224437 2.0E-06 TTCGTGGGATTAACTGA 17 V_IRF3_06_M02871 TRANSFAC + 44222915 44222928 7.0E-06 GGAGAAAGGGCCTG 14 V_OCT1_04_M00138 TRANSFAC - 44223266 44223288 1.0E-06 CATCGTTTATGTAAATATTACAT 23 V_PITX3_01_M01343 TRANSFAC - 44224420 44224435 1.0E-05 CGTGGGATTAACTGAT 16 Tal1_Gata1_MA0140.1 JASPAR - 44224417 44224434 1.0E-06 GTGGGATTAACTGATAAG 18 V_HBP1_03_M02762 TRANSFAC + 44223739 44223754 5.0E-06 AAAATAAATGAATTCT 16 V_GATA1_09_M02254 TRANSFAC - 44224415 44224425 5.0E-06 ACTGATAAGGA 11 V_GATA1_09_M02254 TRANSFAC - 44224439 44224449 5.0E-06 ACTGATAAGGA 11 V_OCT_Q6_M00795 TRANSFAC + 44223271 44223281 3.0E-06 ATATTTACATA 11 V_SP4_Q5_M01273 TRANSFAC + 44223506 44223516 5.0E-06 CCCCCGCCCCC 11 V_MTF1_06_M02882 TRANSFAC + 44223438 44223451 1.0E-05 AACTAGTAAAAATA 14 V_OBOX2_02_M03064 TRANSFAC - 44224421 44224437 2.0E-06 TTCGTGGGATTAACTGA 17 V_BRN4_01_M01473 TRANSFAC + 44223737 44223753 1.0E-05 AGAAAATAAATGAATTC 17 V_OCT2_01_M01368 TRANSFAC - 44223269 44223284 2.0E-06 GTTTATGTAAATATTA 16 V_GATA1_04_M00128 TRANSFAC - 44224414 44224426 1.0E-06 AACTGATAAGGAG 13 V_GATA1_04_M00128 TRANSFAC - 44224438 44224450 3.0E-06 TACTGATAAGGAG 13 V_FOXL1_04_M02753 TRANSFAC - 44223267 44223283 2.0E-06 TTTATGTAAATATTACA 17 V_T3R_Q6_M00963 TRANSFAC - 44223126 44223134 7.0E-06 CCTGTCCTT 9 V_PITX1_01_M01484 TRANSFAC - 44224421 44224437 2.0E-06 TTCGTGGGATTAACTGA 17 V_BDP1_01_M01796 TRANSFAC + 44223781 44223792 9.0E-06 GGAATTGAACTG 12 V_FOXA2_03_M02260 TRANSFAC + 44223272 44223283 4.0E-06 TATTTACATAAA 12 V_BBX_03_M02739 TRANSFAC - 44223739 44223753 7.0E-06 GAATTCATTTATTTT 15 V_SRF_06_M02916 TRANSFAC + 44223733 44223749 8.0E-06 CTTTAGAAAATAAATGA 17 V_HFH3_01_M00289 TRANSFAC + 44223269 44223281 7.0E-06 TAATATTTACATA 13 V_FOXJ2_01_M00422 TRANSFAC - 44223267 44223284 1.0E-05 GTTTATGTAAATATTACA 18 V_ERR1_Q2_01_M02093 TRANSFAC - 44222741 44222751 1.0E-05 GAAGGTCACGG 11 V_HOXD8_01_M01432 TRANSFAC + 44223736 44223752 7.0E-06 TAGAAAATAAATGAATT 17 V_HOMEZ_01_M01429 TRANSFAC - 44223276 44223292 9.0E-06 GCAACATCGTTTATGTA 17 V_SP1_Q2_01_M00933 TRANSFAC + 44223507 44223516 4.0E-06 CCCCGCCCCC 10 V_GATA5_03_M02756 TRANSFAC - 44224412 44224428 0.0E+00 TTAACTGATAAGGAGTC 17 V_GATA5_03_M02756 TRANSFAC - 44224436 44224452 1.0E-06 CCTACTGATAAGGAGTT 17 V_BRN3C_01_M01408 TRANSFAC + 44223738 44223753 8.0E-06 GAAAATAAATGAATTC 16 V_GATA6_04_M02757 TRANSFAC - 44224412 44224428 1.0E-05 TTAACTGATAAGGAGTC 17 V_OBOX3_02_M03065 TRANSFAC - 44224421 44224437 1.0E-06 TTCGTGGGATTAACTGA 17 V_OBOX3_01_M01466 TRANSFAC - 44224421 44224437 1.0E-06 TTCGTGGGATTAACTGA 17 V_FOXK1_03_M02752 TRANSFAC - 44223267 44223283 8.0E-06 TTTATGTAAATATTACA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.