Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PPIF Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10105 peptidylprolyl isomerase F chr10 + 81102219 - 81107719 81107219 Transcription Factor Binding Sites   Download all TFBS in the PPIF promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 81108257 81108269 5.0E-06 GTCAACACAAACA 13 SOX10_HMG_full_dimeric_14_1 SELEX + 81105210 81105223 4.0E-06 TGATTGTGAAGTCA 14 SOX21_HMG_DBD_dimeric_13_2 SELEX - 81104478 81104490 9.0E-06 AGAATCTCATTCA 13 SOX21_HMG_DBD_dimeric_13_2 SELEX + 81109992 81110004 9.0E-06 TGAATGTTTTTCG 13 SRY_HMG_DBD_dimeric_13_2 SELEX + 81104478 81104490 4.0E-06 TGAATGAGATTCT 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 81104478 81104490 2.0E-06 AGAATCTCATTCA 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 81109992 81110004 6.0E-06 CGAAAAACATTCA 13 Esrrb_MA0141.1 JASPAR + 81107728 81107739 0.0E+00 AGCTCAAGGTCA 12 GATA5_GATA_DBD_monomeric_8_1 SELEX + 81109871 81109878 7.0E-06 AGATAAGA 8 SOX8_HMG_DBD_dimeric_14_1 SELEX + 81105210 81105223 4.0E-06 TGATTGTGAAGTCA 14 SOX15_HMG_full_dimeric_15_3 SELEX - 81109991 81110005 3.0E-06 CCGAAAAACATTCAT 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 81102938 81102952 0.0E+00 TTGCTGAGACAGCAG 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 81102938 81102952 0.0E+00 CTGCTGTCTCAGCAA 15 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 81104791 81104802 6.0E-06 GATGACATCATA 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 81104791 81104802 1.0E-05 TATGATGTCATC 12 GATA4_GATA_DBD_monomeric_8_1 SELEX + 81109871 81109878 7.0E-06 AGATAAGA 8 RHOXF1_homeodomain_full_dimeric_9_1 SELEX - 81103084 81103092 8.0E-06 AGATAATCC 9 Klf4_MA0039.2 JASPAR - 81103187 81103196 3.0E-06 AGGGTGTGGC 10 JDP2_bZIP_full_dimeric_12_1 SELEX + 81104791 81104802 5.0E-06 GATGACATCATA 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 81104791 81104802 8.0E-06 TATGATGTCATC 12 SOX2_HMG_full_dimeric_15_1 SELEX - 81104477 81104491 9.0E-06 CAGAATCTCATTCAG 15 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 81104790 81104803 9.0E-06 GGATGACATCATAG 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 81104790 81104803 9.0E-06 CTATGATGTCATCC 14 MAX_bHLH_DBD_dimer-of-dimers_17_1 SELEX - 81104719 81104735 9.0E-06 CATGAGCTGAACACATG 17 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 81107883 81107895 7.0E-06 CGCCACGTGAGCA 13 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 81102937 81102953 1.0E-06 CTTGCTGAGACAGCAGA 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 81102937 81102953 1.0E-06 TCTGCTGTCTCAGCAAG 17 CREB3_bZIP_full_dimeric_14_1 SELEX - 81104790 81104803 6.0E-06 CTATGATGTCATCC 14 HEY1_bHLH_DBD_dimeric_10_1 SELEX - 81107710 81107719 8.0E-06 CACACGTGCC 10 MAFK_bZIP_full_dimeric_15_1 SELEX + 81102938 81102952 1.0E-06 TTGCTGAGACAGCAG 15 MAFK_bZIP_full_dimeric_15_1 SELEX - 81102938 81102952 2.0E-06 CTGCTGTCTCAGCAA 15 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 81107731 81107740 1.0E-05 TCAAGGTCAG 10 SOX15_HMG_full_dimeric_15_1 SELEX - 81110031 81110045 8.0E-06 AGCAATACCAATGCT 15 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 81102935 81102955 1.0E-06 AGCTTGCTGAGACAGCAGATC 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 81102935 81102955 1.0E-06 GATCTGCTGTCTCAGCAAGCT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 81109800 81109820 8.0E-06 ACTTTGAAGAGCCAGCATATT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 81109800 81109820 6.0E-06 AATATGCTGGCTCTTCAAAGT 21 PRDM4_C2H2_full_monomeric_13_1 SELEX - 81109787 81109799 3.0E-06 CTTCAAGGCCACC 13 Gata1_MA0035.2 JASPAR + 81109869 81109879 7.0E-06 GGAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX + 81109871 81109878 7.0E-06 AGATAAGA 8 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 81103008 81103023 4.0E-06 TACCCATAGTACCCCA 16 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 81106728 81106743 5.0E-06 CTCCCATGATGCCCCC 16 MAFG_bZIP_full_dimeric_21_1 SELEX + 81102935 81102955 1.0E-06 AGCTTGCTGAGACAGCAGATC 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 81102935 81102955 0.0E+00 GATCTGCTGTCTCAGCAAGCT 21 MAFG_bZIP_full_dimeric_21_1 SELEX + 81109800 81109820 9.0E-06 ACTTTGAAGAGCCAGCATATT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 81109800 81109820 6.0E-06 AATATGCTGGCTCTTCAAAGT 21 CREB3L1_bZIP_full_dimeric_14_1 SELEX - 81107883 81107896 6.0E-06 CCGCCACGTGAGCA 14 Pou5f1_MA0142.1 JASPAR - 81105297 81105311 7.0E-06 CTCTGTTTTGCAGAT 15 TBX21_TBX_full_dimeric_19_1 SELEX - 81104672 81104690 3.0E-06 TGACATCAGGCAGGTGTTA 19 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 81107731 81107741 6.0E-06 TCAAGGTCAGA 11 REST_MA0138.2 JASPAR + 81106827 81106847 6.0E-06 TGCAGGACCTAGGGCAGCAGG 21 DPRX_homeodomain_DBD_monomeric_11_1 SELEX - 81103083 81103093 5.0E-06 AAGATAATCCA 11 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 81104790 81104803 5.0E-06 GGATGACATCATAG 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 81108257 81108269 1.0E-06 GTCAACACAAACA 13 DPRX_homeodomain_DBD_monomeric_10_1 SELEX + 81103082 81103091 6.0E-06 ATGGATTATC 10 Sox1_HMG_DBD_dimeric_15_2 SELEX + 81104477 81104491 7.0E-06 CTGAATGAGATTCTG 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 81104477 81104491 6.0E-06 CAGAATCTCATTCAG 15 Zfx_MA0146.1 JASPAR - 81106701 81106714 1.0E-06 CCGGCCTGGGCCTG 14 Zfx_MA0146.1 JASPAR - 81108019 81108032 5.0E-06 GTGGCCGGGGCCTG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 81108178 81108191 8.0E-06 AGAAACAGTCACCA 14 V_MEQ_01_M02049 TRANSFAC + 81109932 81109940 7.0E-06 AACACACAC 9 V_CEBPG_Q6_M00622 TRANSFAC - 81105212 81105224 4.0E-06 CTGACTTCACAAT 13 RXR_RAR_DR5_MA0159.1 JASPAR - 81106802 81106818 2.0E-06 GGGTTAGAGAAAGGTGA 17 V_OBOX6_01_M01445 TRANSFAC + 81103078 81103092 7.0E-06 AAACATGGATTATCT 15 V_HNF3B_01_M00131 TRANSFAC - 81106995 81107009 7.0E-06 TTCCATGTTTATTAA 15 V_E2A_Q6_01_M02088 TRANSFAC + 81108027 81108039 1.0E-05 GGCCACCTGGTGG 13 V_GATA1_Q6_M02004 TRANSFAC + 81109866 81109880 5.0E-06 GTGGGAGATAAGAGA 15 V_CHOP_01_M00249 TRANSFAC + 81105196 81105208 3.0E-06 ACATGCAATAACC 13 V_GATA2_02_M00348 TRANSFAC + 81109869 81109878 5.0E-06 GGAGATAAGA 10 V_SMAD3_Q6_01_M01888 TRANSFAC + 81105219 81105231 0.0E+00 AGTCAGACAGACT 13 V_YY1_02_M00069 TRANSFAC + 81102308 81102327 4.0E-06 GCTCAGCCATCTGGTGTCCA 20 V_NF1_Q6_01_M00806 TRANSFAC + 81102907 81102923 9.0E-06 TGAGGTCCTTGCCAAGA 17 V_STAT3STAT3_Q3_M01220 TRANSFAC + 81107962 81107975 2.0E-06 GTGCTGGGAAATGG 14 V_SOX30_03_M02804 TRANSFAC - 81104502 81104517 4.0E-06 AAAGAACAATCAGTTT 16 V_NKX29_01_M01352 TRANSFAC + 81107069 81107085 6.0E-06 TTCAAAGCACTTCACGC 17 V_BCL6_01_M01183 TRANSFAC - 81108167 81108182 1.0E-06 TTTCTTACTTTGCTTT 16 V_LRH1_Q5_01_M02098 TRANSFAC + 81107729 81107739 2.0E-06 GCTCAAGGTCA 11 V_LRH1_Q5_01_M02098 TRANSFAC - 81109789 81109799 5.0E-06 CTTCAAGGCCA 11 V_POU5F1_02_M02245 TRANSFAC - 81105297 81105311 7.0E-06 CTCTGTTTTGCAGAT 15 V_AR_Q6_01_M01996 TRANSFAC + 81104502 81104516 3.0E-06 AAACTGATTGTTCTT 15 V_SP1_Q6_01_M00931 TRANSFAC - 81107930 81107939 4.0E-06 GGGGCGGGGC 10 V_EAR2_Q2_M01728 TRANSFAC + 81104510 81104523 4.0E-06 TGTTCTTTGGCTTT 14 V_EAR2_Q2_M01728 TRANSFAC + 81109825 81109838 9.0E-06 TGGTCTCTGACCTT 14 V_HNF3_Q6_01_M01012 TRANSFAC - 81106992 81107009 2.0E-06 TTCCATGTTTATTAAGGT 18 V_JUNDM2_03_M02772 TRANSFAC + 81104789 81104804 3.0E-06 GGGATGACATCATAGC 16 V_JUNDM2_03_M02772 TRANSFAC - 81104789 81104804 3.0E-06 GCTATGATGTCATCCC 16 V_GKLF_02_M01588 TRANSFAC + 81103187 81103198 3.0E-06 GCCACACCCTAC 12 V_AREB6_04_M00415 TRANSFAC - 81108177 81108185 8.0E-06 CTGTTTCTT 9 V_AP4_Q6_02_M01860 TRANSFAC + 81108537 81108549 8.0E-06 CCAGCTGTGGGAG 13 V_AP4_Q6_02_M01860 TRANSFAC + 81108555 81108567 5.0E-06 CCAGCTGTGTCCA 13 V_PU1_Q4_M01172 TRANSFAC + 81108293 81108311 8.0E-06 TAGTATTTCTTCTTCATTC 19 V_ZFP691_03_M02833 TRANSFAC - 81108542 81108558 4.0E-06 CTGGCAGTGCTCCCACA 17 V_PAX_Q6_M00808 TRANSFAC - 81103128 81103138 9.0E-06 CTGCAACTCAC 11 V_GC_01_M00255 TRANSFAC - 81107928 81107941 6.0E-06 CAGGGGCGGGGCCG 14 V_BEL1_B_M00312 TRANSFAC - 81102928 81102955 9.0E-06 GATCTGCTGTCTCAGCAAGCTTGGTCAC 28 V_SOX8_04_M02912 TRANSFAC - 81109985 81109998 4.0E-06 ACATTCATTTCACC 14 Ddit3_Cebpa_MA0019.1 JASPAR + 81105196 81105207 9.0E-06 ACATGCAATAAC 12 V_IRF4_04_M02872 TRANSFAC + 81108305 81108319 4.0E-06 TTCATTCTCAGTTTC 15 V_SP1_Q6_M00196 TRANSFAC - 81107929 81107941 4.0E-06 CAGGGGCGGGGCC 13 V_LXR_DR4_Q3_M00766 TRANSFAC + 81105194 81105209 7.0E-06 TGACATGCAATAACCC 16 V_LEF1_03_M02878 TRANSFAC - 81104502 81104517 4.0E-06 AAAGAACAATCAGTTT 16 V_NKX22_02_M01372 TRANSFAC - 81105352 81105368 7.0E-06 TTGACCACTTCAGTTCT 17 V_PAX5_01_M00143 TRANSFAC - 81102200 81102227 5.0E-06 CATTGGCTCAGCCCTGCAGGGCGACACC 9 V_MATH1_Q2_M01716 TRANSFAC + 81108029 81108038 9.0E-06 CCACCTGGTG 10 V_NFE4_Q5_M02105 TRANSFAC - 81106721 81106732 5.0E-06 CCCCCTAGCCTG 12 V_IRF3_06_M02871 TRANSFAC - 81106800 81106813 9.0E-06 AGAGAAAGGTGAGA 14 V_PAX6_Q2_M00979 TRANSFAC - 81107727 81107740 3.0E-06 CTGACCTTGAGCTT 14 V_AHR_01_M00139 TRANSFAC - 81102408 81102425 5.0E-06 CTTCCAGCTAGCCTGACA 18 V_PITX3_01_M01343 TRANSFAC - 81106779 81106794 6.0E-06 GGCGGGATTAGTGAGC 16 V_GR_01_M00955 TRANSFAC + 81104495 81104521 7.0E-06 TTAGCACAAACTGATTGTTCTTTGGCT 27 V_SP1SP3_Q4_M01219 TRANSFAC - 81107152 81107162 5.0E-06 CCGCCTCCTCC 11 V_GRE_C_M00205 TRANSFAC - 81102956 81102971 7.0E-06 TGCACAGCCAGTCCTG 16 V_DAX1_01_M01248 TRANSFAC + 81107726 81107745 0.0E+00 AAAGCTCAAGGTCAGATCGC 20 V_DAX1_01_M01248 TRANSFAC - 81109826 81109845 3.0E-06 AGGGGACAAGGTCAGAGACC 20 V_GATA1_09_M02254 TRANSFAC + 81109869 81109879 7.0E-06 GGAGATAAGAG 11 V_XFD2_01_M00268 TRANSFAC + 81106995 81107008 0.0E+00 TTAATAAACATGGA 14 V_ATF3_Q6_M00513 TRANSFAC - 81104790 81104803 3.0E-06 CTATGATGTCATCC 14 V_CTCF_02_M01259 TRANSFAC - 81102311 81102330 8.0E-06 TGATGGACACCAGATGGCTG 20 V_STAT3_03_M01595 TRANSFAC + 81107961 81107976 7.0E-06 GGTGCTGGGAAATGGA 16 V_OCT4_02_M01124 TRANSFAC + 81105192 81105206 6.0E-06 TTTGACATGCAATAA 15 V_CTCF_01_M01200 TRANSFAC - 81102309 81102328 6.0E-06 ATGGACACCAGATGGCTGAG 20 V_NKX23_01_M01457 TRANSFAC + 81107069 81107084 7.0E-06 TTCAAAGCACTTCACG 16 V_FOXO1_Q5_M01216 TRANSFAC - 81108147 81108155 1.0E-05 AAAAACAGA 9 V_SF1_Q6_01_M01132 TRANSFAC - 81107731 81107739 3.0E-06 TGACCTTGA 9 V_TFIII_Q6_M00706 TRANSFAC - 81106760 81106768 6.0E-06 AGAGGGAGG 9 V_TFIII_Q6_M00706 TRANSFAC + 81107748 81107756 6.0E-06 AGAGGGAGG 9 V_GR_Q6_02_M01836 TRANSFAC + 81104505 81104517 7.0E-06 CTGATTGTTCTTT 13 V_SP4_Q5_M01273 TRANSFAC + 81107930 81107940 8.0E-06 GCCCCGCCCCT 11 V_PTF1BETA_Q6_M00657 TRANSFAC + 81107722 81107735 9.0E-06 GGAGAAAGCTCAAG 14 V_GCNF_01_M00526 TRANSFAC + 81107724 81107741 1.0E-06 AGAAAGCTCAAGGTCAGA 18 V_HFH8_01_M00294 TRANSFAC - 81106995 81107007 7.0E-06 CCATGTTTATTAA 13 V_VJUN_01_M00036 TRANSFAC - 81104789 81104804 5.0E-06 GCTATGATGTCATCCC 16 V_ZFP187_04_M02934 TRANSFAC + 81109831 81109846 2.0E-06 CTGACCTTGTCCCCTG 16 V_RARA_04_M02891 TRANSFAC - 81103045 81103060 3.0E-06 AGTGTTGGGTCATTTG 16 V_TTF1_Q5_M02034 TRANSFAC - 81104703 81104716 6.0E-06 CAGCCCTTGAGGGC 14 V_GABPBETA_Q3_M01876 TRANSFAC + 81104782 81104792 5.0E-06 ACAGGAAGGGA 11 V_TAL1_01_M01591 TRANSFAC - 81102857 81102869 6.0E-06 CTTCCTTGTCTTT 13 V_TAL1_01_M01591 TRANSFAC - 81109869 81109881 3.0E-06 CTCTCTTATCTCC 13 V_SIRT6_01_M01797 TRANSFAC + 81109871 81109878 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC + 81109869 81109878 5.0E-06 GGAGATAAGA 10 V_HDX_01_M01333 TRANSFAC - 81107653 81107669 4.0E-06 CGGAAGAAATCATTCTG 17 V_ERR1_Q2_M00511 TRANSFAC + 81107728 81107741 0.0E+00 AGCTCAAGGTCAGA 14 V_ERR2_01_M01589 TRANSFAC + 81107731 81107742 3.0E-06 TCAAGGTCAGAT 12 V_TCF7_04_M02921 TRANSFAC - 81102598 81102612 2.0E-06 CTGTCTTACAAATAA 15 V_TCF7L2_04_M02922 TRANSFAC - 81104502 81104517 5.0E-06 AAAGAACAATCAGTTT 16 V_FPM315_01_M01587 TRANSFAC - 81107422 81107433 3.0E-06 GGAGGAGGAGGA 12 V_NRF2_Q4_M00821 TRANSFAC + 81110041 81110053 1.0E-05 TTGCTGTGTCAGA 13 V_PADS_C_M00211 TRANSFAC + 81109823 81109831 8.0E-06 AGTGGTCTC 9 V_ASCL2_04_M02841 TRANSFAC + 81107268 81107283 9.0E-06 TTCTCCCCGCCCGTGT 16 V_REST_02_M02256 TRANSFAC + 81106827 81106847 6.0E-06 TGCAGGACCTAGGGCAGCAGG 21 V_ETS1_B_M00339 TRANSFAC + 81104782 81104796 1.0E-05 ACAGGAAGGGATGAC 15 V_MEF3_B_M00319 TRANSFAC + 81110016 81110028 6.0E-06 TGCTCAGTTTTCA 13 V_SREBP_Q3_M00776 TRANSFAC - 81107857 81107868 6.0E-06 ACGCTCACCCCA 12 V_RXR_RAR_01_M02272 TRANSFAC - 81106802 81106818 2.0E-06 GGGTTAGAGAAAGGTGA 17 V_FOXJ2_01_M00422 TRANSFAC + 81103070 81103087 7.0E-06 CAAACAACAAACATGGAT 18 V_EFC_Q6_M00626 TRANSFAC - 81107020 81107033 6.0E-06 AGACACCTGGCAAA 14 V_SMAD3_Q6_M00701 TRANSFAC - 81105219 81105227 6.0E-06 TGTCTGACT 9 V_PR_02_M00957 TRANSFAC + 81104495 81104521 8.0E-06 TTAGCACAAACTGATTGTTCTTTGGCT 27 V_SP1_Q2_01_M00933 TRANSFAC + 81107931 81107940 7.0E-06 CCCCGCCCCT 10 V_LPOLYA_B_M00318 TRANSFAC + 81107194 81107201 7.0E-06 CAATAAAG 8 V_SP1_Q4_01_M00932 TRANSFAC - 81107929 81107941 3.0E-06 CAGGGGCGGGGCC 13 V_OBOX6_02_M03068 TRANSFAC + 81103078 81103092 7.0E-06 AAACATGGATTATCT 15 V_NF1_Q6_M00193 TRANSFAC - 81102906 81102923 8.0E-06 TCTTGGCAAGGACCTCAC 18 V_OCT4_01_M01125 TRANSFAC + 81108161 81108175 6.0E-06 TTTTCTAAAGCAAAG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.