Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TSPAN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10103 tetraspanin 1 chr1 + 46635748 - 46641248 46640748 Transcription Factor Binding Sites   Download all TFBS in the TSPAN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 46645386 46645404 0.0E+00 CTGCCAGTAGGTGGCACCA 19 NF-kappaB_MA0061.1 JASPAR - 46640396 46640405 7.0E-06 GGGATTTTCC 10 GABPA_MA0062.2 JASPAR + 46637179 46637189 3.0E-06 CCGGAAGTGGG 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 46637187 46637197 1.0E-05 CCCACACCCCC 11 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 46639405 46639416 0.0E+00 GCTAAAAATAGC 12 EBF1_EBF_full_dimeric_14_1 SELEX + 46637128 46637141 1.0E-06 ATTCCCTAGGGAGC 14 EBF1_EBF_full_dimeric_14_1 SELEX - 46637128 46637141 1.0E-06 GCTCCCTAGGGAAT 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 46637705 46637715 6.0E-06 TGCCTGAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 46637705 46637715 0.0E+00 AGCCTCAGGCA 11 TBX19_TBX_DBD_dimeric_20_1 SELEX + 46641130 46641149 1.0E-06 GTTAACACCTCTGTGTGGAA 20 TBX19_TBX_DBD_dimeric_20_1 SELEX - 46641130 46641149 1.0E-06 TTCCACACAGAGGTGTTAAC 20 PAX5_PAX_DBD_monomeric_18_1 SELEX - 46641084 46641101 7.0E-06 GGTTATGGCTGAATACTT 18 EWSR1-FLI1_MA0149.1 JASPAR - 46636995 46637012 8.0E-06 GCAAGGAGGACAGGAAGC 18 Esrrb_MA0141.1 JASPAR - 46640606 46640617 8.0E-06 AAGTGAAGGTCA 12 STAT1_MA0137.2 JASPAR + 46645592 46645606 7.0E-06 CATTTCCTTGAAAGT 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 46639405 46639416 0.0E+00 GCTAAAAATAGC 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 46637705 46637715 8.0E-06 TGCCTGAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 46637705 46637715 0.0E+00 AGCCTCAGGCA 11 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 46639424 46639435 9.0E-06 GATGATGTCATC 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 46639424 46639435 5.0E-06 GATGACATCATC 12 GMEB2_SAND_DBD_dimer-of-dimers_14_1 SELEX + 46645687 46645700 1.0E-05 TACTTAAGTACGTA 14 IRF7_IRF_DBD_trimeric_17_1 SELEX - 46637686 46637702 7.0E-06 CACTGGAAAATCGGGTT 17 JDP2_bZIP_full_dimeric_12_1 SELEX + 46639424 46639435 4.0E-06 GATGATGTCATC 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 46639424 46639435 3.0E-06 GATGACATCATC 12 MEF2B_MADS_full_dimeric_12_1 SELEX + 46639405 46639416 0.0E+00 GCTAAAAATAGC 12 Tcfcp2l1_MA0145.1 JASPAR + 46640350 46640363 4.0E-06 CCGGTTACAGCCAG 14 MEF2A_MA0052.1 JASPAR - 46639406 46639415 1.0E-06 CTATTTTTAG 10 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 46639423 46639436 9.0E-06 AGATGACATCATCT 14 SP1_MA0079.2 JASPAR - 46639367 46639376 3.0E-06 CCCCTCCCCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 46640394 46640407 2.0E-06 ATGGAAAATCCCCA 14 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 46640278 46640290 1.0E-06 GCATGATGCAACA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 46640277 46640290 0.0E+00 TGCATGATGCAACA 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 46645591 46645607 8.0E-06 CACTTTCAAGGAAATGA 17 CTCF_C2H2_full_monomeric_17_1 SELEX + 46645387 46645403 1.0E-06 GGTGCCACCTACTGGCA 17 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 46639482 46639496 9.0E-06 AACACACACTCTCAC 15 T_TBX_full_dimeric_16_1 SELEX + 46641132 46641147 4.0E-06 TAACACCTCTGTGTGG 16 T_TBX_full_dimeric_16_1 SELEX - 46641132 46641147 6.0E-06 CCACACAGAGGTGTTA 16 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 46640606 46640620 5.0E-06 GAAAAGTGAAGGTCA 15 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 46637705 46637715 4.0E-06 TGCCTGAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 46637705 46637715 0.0E+00 AGCCTCAGGCA 11 NFIB_NFI_full_dimeric_15_1 SELEX + 46637096 46637110 8.0E-06 TGGGCAGAGAGCCAG 15 Myf_MA0055.1 JASPAR - 46639317 46639328 6.0E-06 AGGCAGCAGCAG 12 GABPA_ETS_full_monomeric_10_1 SELEX + 46637178 46637187 9.0E-06 GCCGGAAGTG 10 RORA_1_MA0071.1 JASPAR + 46639171 46639180 2.0E-06 ATCTAGGTCA 10 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 46639423 46639436 8.0E-06 AGATGATGTCATCT 14 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 46639423 46639436 1.0E-06 AGATGACATCATCT 14 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 46637705 46637715 6.0E-06 TGCCTGAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 46637705 46637715 1.0E-06 AGCCTCAGGCA 11 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 46645716 46645729 9.0E-06 ACTAACAAACAACA 14 V_NFAT_Q4_01_M00935 TRANSFAC - 46637691 46637700 7.0E-06 CTGGAAAATC 10 V_NFAT_Q4_01_M00935 TRANSFAC + 46640394 46640403 5.0E-06 ATGGAAAATC 10 V_MEQ_01_M02049 TRANSFAC + 46639482 46639490 7.0E-06 AACACACAC 9 V_NFKAPPAB65_01_M00052 TRANSFAC - 46640396 46640405 7.0E-06 GGGATTTTCC 10 V_NFKB_C_M00208 TRANSFAC - 46640395 46640406 0.0E+00 GGGGATTTTCCA 12 V_SPI1_01_M01203 TRANSFAC + 46645461 46645477 1.0E-05 AAGATGGGGAAGGAGAG 17 V_STAT5A_Q6_M01890 TRANSFAC + 46640542 46640554 5.0E-06 GCCTTTCTCAGAA 13 V_FOXP3_Q4_M00992 TRANSFAC - 46640327 46640343 4.0E-06 GTGGGGTTGTGTCTTAG 17 V_TCF3_01_M01594 TRANSFAC - 46645450 46645462 5.0E-06 TTTTTCTTTTTCT 13 V_NFKB_Q6_01_M00774 TRANSFAC + 46640391 46640406 2.0E-06 CAAATGGAAAATCCCC 16 V_BCL6_Q3_01_M02085 TRANSFAC - 46645596 46645605 7.0E-06 CTTTCAAGGA 10 V_EBF_Q6_M00977 TRANSFAC + 46637129 46637139 1.0E-06 TTCCCTAGGGA 11 V_EBF_Q6_M00977 TRANSFAC - 46637130 46637140 7.0E-06 CTCCCTAGGGA 11 V_CHOP_01_M00249 TRANSFAC - 46637225 46637237 8.0E-06 CAATGCAATACCG 13 V_SMAD3_Q6_01_M01888 TRANSFAC + 46642331 46642343 3.0E-06 AGCCAGACAGCCT 13 V_BCL6B_03_M02740 TRANSFAC - 46645591 46645606 5.0E-06 ACTTTCAAGGAAATGA 16 V_ZEC_01_M01081 TRANSFAC + 46645720 46645732 8.0E-06 GTTTGTTAGTTGC 13 V_COE1_Q6_M01871 TRANSFAC - 46639022 46639035 8.0E-06 TCCCAGAGGAATTA 14 V_RELBP52_01_M01239 TRANSFAC - 46640397 46640406 6.0E-06 GGGGATTTTC 10 V_GABP_B_M00341 TRANSFAC + 46637178 46637189 4.0E-06 GCCGGAAGTGGG 12 V_MEF2_02_M00231 TRANSFAC + 46639399 46639420 1.0E-06 GATACAGCTAAAAATAGCTGGA 22 V_IRF_Q6_01_M00972 TRANSFAC + 46645451 46645461 7.0E-06 GAAAAAGAAAA 11 V_ZFP740_03_M02834 TRANSFAC - 46637182 46637197 7.0E-06 CCCACACCCCCACTTC 16 V_IRF2_Q6_M01882 TRANSFAC + 46645449 46645464 4.0E-06 GAGAAAAAGAAAAAGA 16 V_P50P50_Q3_M01223 TRANSFAC - 46637123 46637135 8.0E-06 TAGGGAATGTCCC 13 V_GABPA_04_M02858 TRANSFAC - 46637071 46637086 1.0E-05 CCTTCTTCCCACACCT 16 V_SP1_03_M02281 TRANSFAC - 46639367 46639376 3.0E-06 CCCCTCCCCC 10 V_JUNDM2_03_M02772 TRANSFAC + 46639422 46639437 6.0E-06 GAGATGATGTCATCTG 16 V_JUNDM2_03_M02772 TRANSFAC - 46639422 46639437 3.0E-06 CAGATGACATCATCTC 16 V_GM497_04_M02864 TRANSFAC + 46639479 46639494 6.0E-06 ACAAACACACACTCTC 16 V_NFAT2_01_M01748 TRANSFAC + 46640394 46640402 2.0E-06 ATGGAAAAT 9 V_LDSPOLYA_B_M00317 TRANSFAC - 46640369 46640384 1.0E-06 TGAGTGTGTGCTCATG 16 V_MEF2A_Q6_M02024 TRANSFAC - 46639405 46639414 1.0E-06 TATTTTTAGC 10 V_STAT4_Q4_M01666 TRANSFAC + 46640546 46640559 9.0E-06 TTCTCAGAATCTCA 14 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 46640498 46640512 3.0E-06 TGAGGTCAGTGTTTT 15 V_HELIOSA_02_M01004 TRANSFAC + 46640392 46640402 5.0E-06 AAATGGAAAAT 11 V_FOXA2_02_M02853 TRANSFAC - 46645718 46645732 3.0E-06 GCAACTAACAAACAA 15 V_MYF_01_M01302 TRANSFAC - 46639317 46639328 6.0E-06 AGGCAGCAGCAG 12 V_HNF3G_Q4_M02015 TRANSFAC + 46645719 46645726 7.0E-06 TGTTTGTT 8 V_ZFP105_03_M02827 TRANSFAC - 46645712 46645726 9.0E-06 AACAAACAACAGAAT 15 V_GFI1_01_M00250 TRANSFAC + 46645575 46645598 5.0E-06 AGCTGCCAAATCTCAGTCATTTCC 24 V_NFAT_Q6_M00302 TRANSFAC - 46637691 46637702 6.0E-06 CACTGGAAAATC 12 V_NFAT_Q6_M00302 TRANSFAC + 46640392 46640403 5.0E-06 AAATGGAAAATC 12 V_IRF2_01_M00063 TRANSFAC - 46640608 46640620 2.0E-06 GAAAAGTGAAGGT 13 Ddit3_Cebpa_MA0019.1 JASPAR - 46637226 46637237 1.0E-06 CAATGCAATACC 12 V_RSRFC4_Q2_M00407 TRANSFAC + 46639403 46639419 0.0E+00 CAGCTAAAAATAGCTGG 17 V_OLF1_01_M00261 TRANSFAC - 46637124 46637145 3.0E-06 CAGGGCTCCCTAGGGAATGTCC 22 V_NFKB_Q6_M00194 TRANSFAC + 46637121 46637134 5.0E-06 AGGGGACATTCCCT 14 V_NFKB_Q6_M00194 TRANSFAC - 46640394 46640407 3.0E-06 TGGGGATTTTCCAT 14 V_ER81_02_M02065 TRANSFAC + 46637178 46637187 1.0E-05 GCCGGAAGTG 10 V_MEF2_03_M00232 TRANSFAC + 46639399 46639420 1.0E-06 GATACAGCTAAAAATAGCTGGA 22 V_SREBP_Q6_M01168 TRANSFAC - 46637213 46637227 4.0E-06 CCGGTCACCCCACCC 15 V_GADP_01_M01258 TRANSFAC - 46637176 46637187 2.0E-06 CACTTCCGGCCT 12 V_SOX12_04_M02900 TRANSFAC + 46645740 46645755 8.0E-06 CAGTCCACAAAGAATT 9 V_ERBETA_Q5_M01875 TRANSFAC + 46645240 46645254 1.0E-06 GTCTGAATGACCCAG 15 V_RREB1_01_M00257 TRANSFAC - 46637185 46637198 3.0E-06 ACCCACACCCCCAC 14 V_PNR_01_M01650 TRANSFAC - 46641042 46641055 7.0E-06 GGGATCATAGTTTA 14 V_MEF2_Q6_01_M00941 TRANSFAC - 46639406 46639417 0.0E+00 AGCTATTTTTAG 12 V_ATF3_Q6_M00513 TRANSFAC - 46640502 46640515 7.0E-06 CTCTGAGGTCAGTG 14 V_STAT4_Q5_M02117 TRANSFAC - 46640545 46640554 5.0E-06 TTCTGAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC - 46645594 46645603 5.0E-06 TTCAAGGAAA 10 V_CREB_Q2_01_M00916 TRANSFAC - 46639422 46639435 1.0E-05 GATGACATCATCTC 14 V_CTCF_02_M01259 TRANSFAC - 46645388 46645407 0.0E+00 TTTCTGCCAGTAGGTGGCAC 20 V_CTCF_01_M01200 TRANSFAC - 46645386 46645405 0.0E+00 TCTGCCAGTAGGTGGCACCA 20 V_MZF1_02_M00084 TRANSFAC - 46640590 46640602 6.0E-06 GGGGGATGGGGAA 13 V_GLI3_Q5_01_M01657 TRANSFAC - 46641187 46641195 6.0E-06 GTGGGTGGT 9 V_SP4_Q5_M01273 TRANSFAC - 46639367 46639377 5.0E-06 GCCCCTCCCCC 11 V_VJUN_01_M00036 TRANSFAC - 46639422 46639437 6.0E-06 CAGATGACATCATCTC 16 V_MAZR_01_M00491 TRANSFAC - 46640456 46640468 1.0E-05 AGGGGTGGGGCAA 13 V_FAC1_01_M00456 TRANSFAC - 46641175 46641188 9.0E-06 GTGAACAACAAATA 14 V_CEBPA_01_M00116 TRANSFAC - 46638983 46638996 7.0E-06 AGATTACACAAGCT 14 V_LUN1_01_M00480 TRANSFAC + 46644873 46644889 3.0E-06 TCCCAGCTACTTGGGAG 17 V_STAT1STAT1_Q3_M01212 TRANSFAC - 46645593 46645605 3.0E-06 CTTTCAAGGAAAT 13 V_RSRFC4_01_M00026 TRANSFAC + 46639403 46639418 8.0E-06 CAGCTAAAAATAGCTG 16 V_RSRFC4_01_M00026 TRANSFAC - 46639403 46639418 0.0E+00 CAGCTATTTTTAGCTG 16 V_ZFP281_01_M01597 TRANSFAC + 46639366 46639376 3.0E-06 AGGGGGAGGGG 11 V_IRF1_Q6_01_M01881 TRANSFAC - 46645450 46645463 7.0E-06 CTTTTTCTTTTTCT 14 V_NFKAPPAB_01_M00054 TRANSFAC - 46640396 46640405 8.0E-06 GGGATTTTCC 10 V_ZFP281_04_M02831 TRANSFAC - 46639364 46639378 3.0E-06 TGCCCCTCCCCCTTC 15 V_ZFP281_04_M02831 TRANSFAC + 46640591 46640605 1.0E-06 TCCCCATCCCCCTCC 15 V_SREBP1_02_M00221 TRANSFAC - 46637215 46637225 2.0E-06 GGTCACCCCAC 11 V_SRF_06_M02916 TRANSFAC + 46645449 46645465 9.0E-06 GAGAAAAAGAAAAAGAT 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 46636995 46637012 8.0E-06 GCAAGGAGGACAGGAAGC 18 V_VMAF_01_M00035 TRANSFAC - 46641113 46641131 1.0E-05 ACCAGCTGACTATGCAGGG 19 V_HNF3B_Q6_M02014 TRANSFAC + 46645718 46645726 1.0E-05 TTGTTTGTT 9 V_MEF2A_05_M01301 TRANSFAC - 46639406 46639417 0.0E+00 AGCTATTTTTAG 12 V_HOXA10_01_M01464 TRANSFAC - 46643389 46643404 7.0E-06 AAGGCAAAAAATTTCA 16 V_SP1_Q4_01_M00932 TRANSFAC + 46639366 46639378 8.0E-06 AGGGGGAGGGGCA 13 V_SREBP1_Q5_M01173 TRANSFAC - 46637213 46637227 2.0E-06 CCGGTCACCCCACCC 15 V_ATATA_B_M00311 TRANSFAC - 46645688 46645697 5.0E-06 GTACTTAAGT 10 V_BRCA_01_M01082 TRANSFAC + 46645713 46645720 1.0E-05 TTCTGTTG 8 V_STAT1_05_M01260 TRANSFAC - 46640536 46640557 8.0E-06 AGATTCTGAGAAAGGCATACTA 22 V_STAT1_05_M01260 TRANSFAC - 46645585 46645606 1.0E-06 ACTTTCAAGGAAATGACTGAGA 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.