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USH1C Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10083 Usher syndrome 1C (autosomal recessive, severe) chr11 - 17565463 - 17570963 17565963 Transcription Factor Binding Sites   Download all TFBS in the USH1C promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 17562912 17562929 2.0E-06 TCAGTCAATATTTATTGC 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 17562912 17562929 1.0E-06 GCAATAAATATTGACTGA 18 POU4F2_POU_full_monomeric_16_1 SELEX + 17564029 17564044 1.0E-06 ATTAATAAGTAATGAC 16 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 17562920 17562929 9.0E-06 GCAATAAATA 10 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 17563069 17563078 9.0E-06 GCAATAAATA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 17562920 17562929 7.0E-06 GCAATAAATA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 17563069 17563078 7.0E-06 GCAATAAATA 10 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 17562947 17562960 8.0E-06 TGATTAACAAATTC 14 POU3F2_POU_DBD_monomeric_13_1 SELEX + 17562933 17562945 9.0E-06 TGTGAATAAATGA 13 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 17568717 17568731 9.0E-06 AAATTATGGTAATAA 15 POU3F4_POU_DBD_monomeric_11_1 SELEX + 17562935 17562945 9.0E-06 TGAATAAATGA 11 HNF1B_MA0153.1 JASPAR + 17563087 17563098 4.0E-06 CCAATGAGTAAC 12 HNF1B_MA0153.1 JASPAR + 17564030 17564041 3.0E-06 TTAATAAGTAAT 12 POU1F1_POU_DBD_monomeric_14_1 SELEX + 17568719 17568732 1.0E-06 ATTATGGTAATAAG 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 17562914 17562927 3.0E-06 AGTCAATATTTATT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 17562914 17562927 0.0E+00 AATAAATATTGACT 14 Pax4_MA0068.1 JASPAR - 17562963 17562992 7.0E-06 GAATAAGATCAGAAAGAGCCACCACTCTCT 30 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 17568795 17568806 6.0E-06 AGCCCTGGGGCA 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 17568795 17568806 7.0E-06 TGCCCCAGGGCT 12 POU4F3_POU_DBD_monomeric_16_1 SELEX + 17562942 17562957 4.0E-06 ATGAATGATTAACAAA 16 POU4F3_POU_DBD_monomeric_16_1 SELEX + 17564029 17564044 1.0E-06 ATTAATAAGTAATGAC 16 POU3F3_POU_DBD_monomeric_13_1 SELEX + 17568719 17568731 1.0E-06 ATTATGGTAATAA 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 17562914 17562927 3.0E-06 AGTCAATATTTATT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 17562914 17562927 0.0E+00 AATAAATATTGACT 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 17562941 17562955 0.0E+00 AATGAATGATTAACA 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 17562941 17562955 7.0E-06 TGTTAATCATTCATT 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 17564028 17564042 4.0E-06 TATTAATAAGTAATG 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 17564028 17564042 5.0E-06 CATTACTTATTAATA 15 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 17562920 17562930 6.0E-06 GGCAATAAATA 11 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 17563068 17563078 6.0E-06 GGCAATAAATA 11 SP1_MA0079.2 JASPAR - 17568778 17568787 9.0E-06 CCCCTCCTCC 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 17562914 17562927 0.0E+00 AGTCAATATTTATT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 17562914 17562927 0.0E+00 AATAAATATTGACT 14 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 17563057 17563073 1.0E-05 ATTGCTGAAGAGGCAAT 17 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 17562954 17562970 8.0E-06 CACTCTCTAGGAATTTG 17 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 17563055 17563075 1.0E-05 TGATTGCTGAAGAGGCAATAA 21 POU1F1_POU_DBD_monomeric_17_1 SELEX + 17562939 17562955 4.0E-06 TAAATGAATGATTAACA 17 POU1F1_POU_DBD_monomeric_17_1 SELEX + 17564026 17564042 2.0E-06 GATATTAATAAGTAATG 17 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 17562942 17562954 6.0E-06 ATGAATGATTAAC 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 17562942 17562954 1.0E-06 GTTAATCATTCAT 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 17564029 17564041 3.0E-06 ATTAATAAGTAAT 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 17564029 17564041 5.0E-06 ATTACTTATTAAT 13 POU3F1_POU_DBD_monomeric_12_1 SELEX + 17568720 17568731 3.0E-06 TTATGGTAATAA 12 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 17564031 17564043 9.0E-06 TCATTACTTATTA 13 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 17562914 17562927 0.0E+00 AGTCAATATTTATT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 17562914 17562927 0.0E+00 AATAAATATTGACT 14 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 17568716 17568732 3.0E-06 TAAATTATGGTAATAAG 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 17568716 17568732 6.0E-06 CTTATTACCATAATTTA 17 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 17568795 17568806 6.0E-06 AGCCCTGGGGCA 12 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 17568795 17568806 8.0E-06 TGCCCCAGGGCT 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 17568719 17568730 4.0E-06 ATTATGGTAATA 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 17568795 17568806 8.0E-06 TGCCCCAGGGCT 12 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 17562941 17562955 0.0E+00 AATGAATGATTAACA 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 17562941 17562955 6.0E-06 TGTTAATCATTCATT 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 17564028 17564042 5.0E-06 TATTAATAAGTAATG 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 17564028 17564042 5.0E-06 CATTACTTATTAATA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 17564029 17564040 2.0E-06 ATTAATAAGTAA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 17568720 17568731 4.0E-06 TTATGGTAATAA 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 17568795 17568806 5.0E-06 TGCCCCAGGGCT 12 POU4F1_POU_DBD_monomeric_14_1 SELEX + 17562942 17562955 8.0E-06 ATGAATGATTAACA 14 POU4F1_POU_DBD_monomeric_14_1 SELEX + 17564029 17564042 1.0E-06 ATTAATAAGTAATG 14 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 17562920 17562930 7.0E-06 GGCAATAAATA 11 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 17563068 17563078 7.0E-06 GGCAATAAATA 11 V_HOXA9_01_M01351 TRANSFAC - 17562916 17562932 2.0E-06 TAGGCAATAAATATTGA 17 V_HOXA9_01_M01351 TRANSFAC + 17563066 17563082 6.0E-06 GAGGCAATAAATACTTT 17 V_CDP_03_M01342 TRANSFAC + 17562941 17562957 9.0E-06 AATGAATGATTAACAAA 17 V_E2A_Q6_01_M02088 TRANSFAC + 17570198 17570210 1.0E-05 GGCCACCTGGTGG 13 V_DBX1_01_M01483 TRANSFAC + 17562936 17562952 6.0E-06 GAATAAATGAATGATTA 17 V_DBX1_01_M01483 TRANSFAC + 17564027 17564043 8.0E-06 ATATTAATAAGTAATGA 17 V_TCF3_01_M01594 TRANSFAC - 17563274 17563286 2.0E-06 CCTTTGATTTGTG 13 V_LEF1_04_M02774 TRANSFAC - 17563274 17563290 8.0E-06 ACTCCCTTTGATTTGTG 17 V_CDX2_Q5_01_M01659 TRANSFAC - 17562919 17562929 8.0E-06 GCAATAAATAT 11 V_BCL6B_03_M02740 TRANSFAC - 17562954 17562969 0.0E+00 ACTCTCTAGGAATTTG 16 V_OCT1_01_M00135 TRANSFAC + 17568716 17568734 9.0E-06 TAAATTATGGTAATAAGCT 19 V_POU1F1_Q6_M00744 TRANSFAC + 17562934 17562943 8.0E-06 GTGAATAAAT 10 V_POU3F2_02_M00464 TRANSFAC + 17568720 17568729 2.0E-06 TTATGGTAAT 10 V_CUX1_03_M02958 TRANSFAC + 17562941 17562957 9.0E-06 AATGAATGATTAACAAA 17 V_SP1_03_M02281 TRANSFAC - 17568778 17568787 9.0E-06 CCCCTCCTCC 10 V_NKX62_Q2_M00489 TRANSFAC - 17562918 17562929 7.0E-06 GCAATAAATATT 12 V_HNF1_C_M00206 TRANSFAC + 17563085 17563101 0.0E+00 AGCCAATGAGTAACCAA 17 V_HOXA6_01_M01392 TRANSFAC - 17564032 17564047 9.0E-06 ACAGTCATTACTTATT 16 V_CART1_01_M00416 TRANSFAC - 17568717 17568734 1.0E-06 AGCTTATTACCATAATTT 18 V_HNF1_Q6_M00790 TRANSFAC - 17562939 17562956 0.0E+00 TTGTTAATCATTCATTTA 18 V_HNF1_Q6_M00790 TRANSFAC + 17562940 17562957 3.0E-06 AAATGAATGATTAACAAA 18 V_HNF1_Q6_M00790 TRANSFAC - 17563083 17563100 2.0E-06 TGGTTACTCATTGGCTTA 18 V_HOXB9_01_M01426 TRANSFAC + 17563066 17563081 8.0E-06 GAGGCAATAAATACTT 16 V_HNF1B_04_M02266 TRANSFAC + 17563087 17563098 4.0E-06 CCAATGAGTAAC 12 V_HNF1B_04_M02266 TRANSFAC + 17564030 17564041 3.0E-06 TTAATAAGTAAT 12 V_HOXB6_01_M01460 TRANSFAC + 17564032 17564047 5.0E-06 AATAAGTAATGACTGT 16 V_CDX2_01_M01449 TRANSFAC - 17562918 17562933 0.0E+00 ATAGGCAATAAATATT 16 V_CDX2_01_M01449 TRANSFAC + 17563065 17563080 2.0E-06 AGAGGCAATAAATACT 16 V_CDX2_Q5_M00729 TRANSFAC + 17562917 17562930 2.0E-06 CAATATTTATTGCC 14 V_HNF1_Q6_01_M01011 TRANSFAC + 17562938 17562958 1.0E-06 ATAAATGAATGATTAACAAAT 21 V_HNF1_Q6_01_M01011 TRANSFAC - 17562938 17562958 7.0E-06 ATTTGTTAATCATTCATTTAT 21 V_HNF1_Q6_01_M01011 TRANSFAC + 17563082 17563102 4.0E-06 TTAAGCCAATGAGTAACCAAG 21 V_MATH1_Q2_M01716 TRANSFAC + 17570200 17570209 9.0E-06 CCACCTGGTG 10 V_CDX1_01_M01373 TRANSFAC - 17562918 17562933 1.0E-06 ATAGGCAATAAATATT 16 V_CDX1_01_M01373 TRANSFAC + 17563065 17563080 6.0E-06 AGAGGCAATAAATACT 16 V_OCT1_04_M00138 TRANSFAC + 17564021 17564043 9.0E-06 ACAGGGATATTAATAAGTAATGA 23 V_AHR_01_M00139 TRANSFAC - 17568744 17568761 5.0E-06 CCCCGAACTAGAGTGACA 18 V_HBP1_03_M02762 TRANSFAC + 17562935 17562950 2.0E-06 TGAATAAATGAATGAT 16 V_HBP1_03_M02762 TRANSFAC + 17562939 17562954 5.0E-06 TAAATGAATGATTAAC 16 V_ZBRK1_01_M01105 TRANSFAC - 17563186 17563200 3.0E-06 GGGGAGCAGGGCTTG 15 V_PAX8_01_M00717 TRANSFAC + 17563045 17563059 3.0E-06 CATAAATGCATGATT 15 V_NKX3A_01_M00451 TRANSFAC - 17563074 17563085 5.0E-06 TTAAAAGTATTT 12 V_NKX3A_01_M00451 TRANSFAC + 17564031 17564042 8.0E-06 TAATAAGTAATG 12 V_NCX_02_M01420 TRANSFAC + 17562936 17562952 8.0E-06 GAATAAATGAATGATTA 17 V_NCX_02_M01420 TRANSFAC - 17564027 17564043 6.0E-06 TCATTACTTATTAATAT 17 V_NKX63_01_M01470 TRANSFAC + 17564032 17564048 8.0E-06 AATAAGTAATGACTGTT 17 V_PAX8_B_M00328 TRANSFAC + 17563044 17563061 2.0E-06 TCATAAATGCATGATTGC 18 V_CAAT_01_M00254 TRANSFAC + 17563082 17563093 6.0E-06 TTAAGCCAATGA 12 V_ALPHACP1_01_M00687 TRANSFAC + 17563084 17563094 1.0E-06 AAGCCAATGAG 11 V_HOXB8_01_M01451 TRANSFAC - 17562918 17562933 2.0E-06 ATAGGCAATAAATATT 16 V_HOXB8_01_M01451 TRANSFAC + 17563065 17563080 1.0E-06 AGAGGCAATAAATACT 16 V_LMX1B_01_M01363 TRANSFAC + 17564025 17564041 6.0E-06 GGATATTAATAAGTAAT 17 V_LMX1B_01_M01363 TRANSFAC - 17564026 17564042 7.0E-06 CATTACTTATTAATATC 17 V_TCFAP2B_03_M02820 TRANSFAC + 17568794 17568807 7.0E-06 GAGCCCTGGGGCAT 14 V_FPM315_01_M01587 TRANSFAC - 17563190 17563201 4.0E-06 GGGGGAGCAGGG 12 V_FPM315_01_M01587 TRANSFAC + 17568775 17568786 9.0E-06 CTGGGAGGAGGG 12 V_TCF4_Q5_M00671 TRANSFAC + 17563144 17563151 1.0E-05 CCTTTGAA 8 V_BARX2_01_M01431 TRANSFAC + 17564034 17564049 6.0E-06 TAAGTAATGACTGTTG 16 V_FOXJ2_01_M00422 TRANSFAC - 17562915 17562932 9.0E-06 TAGGCAATAAATATTGAC 18 V_HNF1A_Q5_M02013 TRANSFAC - 17562945 17562955 1.0E-06 TGTTAATCATT 11 V_HOXD8_01_M01432 TRANSFAC + 17564030 17564046 5.0E-06 TTAATAAGTAATGACTG 17 V_SOX1_03_M02802 TRANSFAC - 17562937 17562952 3.0E-06 TAATCATTCATTTATT 16 V_CTF1_01_M01196 TRANSFAC + 17568670 17568683 3.0E-06 TGGCCACAGGCCAA 14 V_BRN3C_01_M01408 TRANSFAC + 17564025 17564040 4.0E-06 GGATATTAATAAGTAA 16 V_HOXA10_01_M01464 TRANSFAC - 17562917 17562932 2.0E-06 TAGGCAATAAATATTG 16 V_HOXA10_01_M01464 TRANSFAC + 17563066 17563081 8.0E-06 GAGGCAATAAATACTT 16 V_TCFAP2E_03_M02822 TRANSFAC - 17563015 17563029 8.0E-06 TCTGCCTGAGGCCAG 15 V_SOX5_04_M02910 TRANSFAC - 17568713 17568727 2.0E-06 TACCATAATTTAGGC 15 TLX1_NFIC_MA0119.1 JASPAR + 17568670 17568683 3.0E-06 TGGCCACAGGCCAA 14 V_HOXC9_01_M01416 TRANSFAC - 17562918 17562933 2.0E-06 ATAGGCAATAAATATT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.