Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NDUFC2-KCTD14 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 100532726 NDUFC2-KCTD14 readthrough chr11 - 77790765 - 77796265 77791265 Transcription Factor Binding Sites   Download all TFBS in the NDUFC2-KCTD14 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 77790426 77790434 8.0E-06 GCACTTGAA 9 NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 77794294 77794302 8.0E-06 GCACTTGAA 9 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 77791232 77791244 2.0E-06 ATAAACGTAATTA 13 PAX6_PAX_DBD_monomeric_19_1 SELEX + 77790399 77790417 1.0E-06 GTTCCTGCTTCACTGCACC 19 IRF7_IRF_DBD_dimeric_14_1 SELEX - 77790997 77791010 4.0E-06 AGCAAAGTGAAACT 14 IRF7_IRF_DBD_dimeric_14_1 SELEX - 77791266 77791279 1.0E-06 CAGAAAACGAAAAC 14 ZNF713_C2H2_full_monomeric_17_1 SELEX - 77792083 77792099 9.0E-06 AAGAAGAATGTCACAAG 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 77792154 77792170 7.0E-06 GCTAACAATAGATAACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 77792154 77792165 7.0E-06 GCTAACAATAGA 12 ESR2_MA0258.1 JASPAR - 77795786 77795803 8.0E-06 TAAGGTCAAGTTGTTCAG 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 77791230 77791244 1.0E-05 TGATAAACGTAATTA 15 FOXL1_forkhead_full_dimeric_13_1 SELEX + 77792023 77792035 6.0E-06 GATTAACAAACAT 13 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 77792154 77792165 8.0E-06 GCTAACAATAGA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 77795834 77795845 1.0E-05 TGGCAGCTGCCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 77795834 77795845 1.0E-05 TGGCAGCTGCCA 12 Pax4_MA0068.1 JASPAR + 77794064 77794093 0.0E+00 AAAAATTTGAATCTGGCCCTCAAACCCCAC 30 TEAD1_TEA_full_monomeric_10_1 SELEX + 77792031 77792040 9.0E-06 AACATTCCAC 10 IRF1_MA0050.1 JASPAR - 77790997 77791008 1.0E-06 CAAAGTGAAACT 12 IRF1_MA0050.1 JASPAR - 77791266 77791277 3.0E-06 GAAAACGAAAAC 12 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 77787764 77787773 5.0E-06 AGCATATGCT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 77787764 77787773 5.0E-06 AGCATATGCT 10 RUNX2_RUNX_DBD_dimeric_18_1 SELEX + 77790842 77790859 1.0E-05 AAACCACGACGACCACTA 18 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 77792024 77792034 7.0E-06 ATTAACAAACA 11 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 77787763 77787774 3.0E-06 AAGCATATGCTC 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 77787763 77787774 5.0E-06 GAGCATATGCTT 12 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 77791671 77791687 5.0E-06 AAGGCTGAGGCAGCATA 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 77791671 77791687 9.0E-06 TATGCTGCCTCAGCCTT 17 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 77787764 77787773 9.0E-06 AGCATATGCT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 77787764 77787773 9.0E-06 AGCATATGCT 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 77795636 77795652 5.0E-06 TGTTTTCAAGGAATGGA 17 Lhx3_MA0135.1 JASPAR + 77794099 77794111 3.0E-06 GAATTAATCAACC 13 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 77791669 77791689 6.0E-06 GGAAGGCTGAGGCAGCATAAT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 77791669 77791689 3.0E-06 ATTATGCTGCCTCAGCCTTCC 21 VENTX_homeodomain_DBD_dimeric_21_1 SELEX - 77791242 77791262 3.0E-06 CTTTTATGGAATTTCAATTAA 21 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 77792032 77792039 1.0E-05 ACATTCCA 8 IRF9_IRF_full_trimeric_15_1 SELEX + 77791785 77791799 6.0E-06 AACAAGAGCGAAACT 15 Evi1_MA0029.1 JASPAR - 77791183 77791196 2.0E-06 ATGAAAAGATAAAT 14 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 77791229 77791245 1.0E-06 TTGATAAACGTAATTAA 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 77791229 77791245 1.0E-06 TTAATTACGTTTATCAA 17 MAFG_bZIP_full_dimeric_21_1 SELEX + 77791669 77791689 3.0E-06 GGAAGGCTGAGGCAGCATAAT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 77791669 77791689 8.0E-06 ATTATGCTGCCTCAGCCTTCC 21 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 77791986 77792001 8.0E-06 CACAAAAGAAGTAAAA 16 GLI2_C2H2_DBD_monomeric_12_1 SELEX - 77795730 77795741 6.0E-06 CCGACCACACAG 12 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 77792131 77792146 7.0E-06 GGGGTCACAAGGTACA 16 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 77792031 77792040 8.0E-06 AACATTCCAC 10 NFIA_NFI_full_monomeric_10_1 SELEX + 77790430 77790439 1.0E-06 AGTGCCAAAT 10 IRF2_MA0051.1 JASPAR - 77790992 77791009 3.0E-06 GCAAAGTGAAACTTAGTA 18 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 77790842 77790859 7.0E-06 AAACCACGACGACCACTA 18 V_NFAT_Q4_01_M00935 TRANSFAC - 77791865 77791874 2.0E-06 CTGGAAAATT 10 V_HNF3B_01_M00131 TRANSFAC - 77792025 77792039 2.0E-06 TGGAATGTTTGTTAA 15 V_TCF3_01_M01594 TRANSFAC - 77791813 77791825 5.0E-06 CCTTTTTTTTTTT 13 V_XPF1_Q6_M00684 TRANSFAC + 77795785 77795794 4.0E-06 TCTGAACAAC 10 V_HMGIY_Q3_M01010 TRANSFAC - 77794062 77794076 5.0E-06 GATTCAAATTTTTGA 15 V_FOXD3_01_M00130 TRANSFAC - 77792026 77792037 9.0E-06 GAATGTTTGTTA 12 V_BCL6_01_M01183 TRANSFAC - 77791809 77791824 1.0E-06 CTTTTTTTTTTTCTTT 16 V_ETS_B_M00340 TRANSFAC - 77792003 77792016 5.0E-06 GGCAGGAAGTGGCT 14 V_STAT_Q6_M00777 TRANSFAC - 77787797 77787809 7.0E-06 TGCCTTTCTGGGA 13 V_HOXA13_02_M01297 TRANSFAC + 77791994 77792002 8.0E-06 AAGTAAAAC 9 V_SOX5_01_M00042 TRANSFAC + 77792155 77792164 7.0E-06 CTAACAATAG 10 V_PROP1_01_M01294 TRANSFAC - 77787722 77787732 5.0E-06 TAATTTGATTC 11 V_PROP1_01_M01294 TRANSFAC + 77791851 77791861 9.0E-06 TAATTCTGTTA 11 V_SRY_02_M00160 TRANSFAC + 77792154 77792165 5.0E-06 GCTAACAATAGA 12 V_IRF2_Q6_M01882 TRANSFAC - 77790995 77791010 1.0E-06 AGCAAAGTGAAACTTA 16 V_IRF2_Q6_M01882 TRANSFAC - 77791264 77791279 8.0E-06 CAGAAAACGAAAACTA 16 V_OTX_Q1_M01117 TRANSFAC - 77794100 77794107 5.0E-06 GATTAATT 8 V_GCNF_Q3_M02009 TRANSFAC - 77795794 77795803 6.0E-06 TAAGGTCAAG 10 V_CEBP_Q2_M00190 TRANSFAC - 77791856 77791869 8.0E-06 AAATTGCTTAACAG 14 V_IRF3_05_M02767 TRANSFAC - 77791264 77791277 7.0E-06 GAAAACGAAAACTA 14 V_HFH4_01_M00742 TRANSFAC - 77792025 77792037 3.0E-06 GAATGTTTGTTAA 13 V_NERF_Q2_M00531 TRANSFAC - 77792000 77792017 5.0E-06 AGGCAGGAAGTGGCTGTT 18 V_HTF_01_M00538 TRANSFAC + 77791226 77791249 8.0E-06 GTTTTGATAAACGTAATTAATTGA 24 V_LHX3A_01_M00510 TRANSFAC + 77794100 77794109 4.0E-06 AATTAATCAA 10 V_GM497_04_M02864 TRANSFAC + 77794215 77794230 8.0E-06 TCCGGCACACAAGAAC 16 V_TCFAP2E_04_M02926 TRANSFAC + 77791807 77791820 0.0E+00 AAAAAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 77791808 77791821 1.0E-06 AAAAGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 77791809 77791822 1.0E-06 AAAGAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 77791810 77791823 2.0E-06 AAGAAAAAAAAAAA 14 V_CDX_Q5_M00991 TRANSFAC - 77791847 77791864 5.0E-06 GCTTAACAGAATTATAAA 18 V_TAL1_GATA1_01_M02243 TRANSFAC - 77791184 77791201 8.0E-06 ATTGGATGAAAAGATAAA 18 V_TAL1_GATA1_01_M02243 TRANSFAC + 77792152 77792169 3.0E-06 CTGCTAACAATAGATAAC 18 V_ETS_Q4_M00771 TRANSFAC + 77792003 77792014 0.0E+00 AGCCACTTCCTG 12 RXRA_VDR_MA0074.1 JASPAR + 77791066 77791080 3.0E-06 GGGTCGAGGAGTACC 15 RXRA_VDR_MA0074.1 JASPAR - 77792131 77792145 1.0E-06 GGGTCACAAGGTACA 15 V_HELIOSA_02_M01004 TRANSFAC + 77790835 77790845 4.0E-06 ACAAGGAAAAC 11 V_ZFP105_03_M02827 TRANSFAC + 77791809 77791823 9.0E-06 AAAGAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 77791810 77791824 2.0E-06 AAGAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 77791811 77791825 6.0E-06 AGAAAAAAAAAAAGG 15 V_HNF3G_Q4_M02015 TRANSFAC - 77792027 77792034 7.0E-06 TGTTTGTT 8 V_PAX9_B_M00329 TRANSFAC + 77790465 77790488 1.0E-06 AAGAGCTAATGGGGCGCGGACTCC 24 V_IRF2_01_M00063 TRANSFAC - 77790997 77791009 2.0E-06 GCAAAGTGAAACT 13 V_IRF2_01_M00063 TRANSFAC + 77791787 77791799 1.0E-05 CAAGAGCGAAACT 13 V_RSRFC4_Q2_M00407 TRANSFAC + 77792152 77792168 5.0E-06 CTGCTAACAATAGATAA 17 V_HNF3_Q6_M00791 TRANSFAC + 77792024 77792036 4.0E-06 ATTAACAAACATT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 77792024 77792034 6.0E-06 TGTTTGTTAAT 11 V_IRF_Q6_M00772 TRANSFAC + 77790994 77791008 5.0E-06 CTAAGTTTCACTTTG 15 V_PAX5_01_M00143 TRANSFAC - 77790394 77790421 4.0E-06 CTGAGGTGCAGTGAAGCAGGAACTGAGT 28 V_EGR1_04_M02848 TRANSFAC + 77791034 77791049 2.0E-06 GTGGGAGTGGGATTCA 16 V_NKX25_Q5_M01043 TRANSFAC + 77790802 77790811 7.0E-06 TTCCACTTGA 10 V_TATA_C_M00216 TRANSFAC + 77791253 77791262 6.0E-06 TCCATAAAAG 10 V_ASCL2_03_M02737 TRANSFAC + 77795832 77795848 7.0E-06 TGTGGCAGCTGCCACCG 17 V_ISRE_01_M00258 TRANSFAC + 77790996 77791010 9.0E-06 AAGTTTCACTTTGCT 15 V_HOX13_01_M00023 TRANSFAC - 77794118 77794147 1.0E-06 CTGCCTCTTCTCTATTATTGTACACATTGA 30 V_PBX1_01_M00096 TRANSFAC + 77794101 77794109 4.0E-06 ATTAATCAA 9 V_NFE4_Q5_M02105 TRANSFAC + 77791157 77791168 9.0E-06 CTCCCTCCCCTG 12 V_OCT1_04_M00138 TRANSFAC - 77791225 77791247 6.0E-06 AATTAATTACGTTTATCAAAACT 23 Tal1_Gata1_MA0140.1 JASPAR - 77791184 77791201 8.0E-06 ATTGGATGAAAAGATAAA 18 Tal1_Gata1_MA0140.1 JASPAR + 77792152 77792169 3.0E-06 CTGCTAACAATAGATAAC 18 V_DAX1_01_M01248 TRANSFAC - 77795790 77795809 8.0E-06 AAACAGTAAGGTCAAGTTGT 20 V_TEL2_Q6_M00678 TRANSFAC + 77792005 77792014 6.0E-06 CCACTTCCTG 10 V_AP1_C_M00199 TRANSFAC - 77795684 77795692 3.0E-06 ATGAGTCAG 9 V_ISGF3G_03_M02771 TRANSFAC - 77790995 77791009 5.0E-06 GCAAAGTGAAACTTA 15 V_ISGF3G_03_M02771 TRANSFAC - 77791264 77791278 4.0E-06 AGAAAACGAAAACTA 15 V_LHX3b_01_M01971 TRANSFAC + 77794100 77794109 5.0E-06 AATTAATCAA 10 V_SOX9_B1_M00410 TRANSFAC + 77792153 77792166 8.0E-06 TGCTAACAATAGAT 14 V_IRF7_01_M00453 TRANSFAC - 77790994 77791011 5.0E-06 GAGCAAAGTGAAACTTAG 18 V_IRF7_01_M00453 TRANSFAC - 77791263 77791280 3.0E-06 TCAGAAAACGAAAACTAG 18 V_SOX15_03_M02799 TRANSFAC + 77792152 77792168 8.0E-06 CTGCTAACAATAGATAA 17 V_MTF1_06_M02882 TRANSFAC + 77791806 77791819 2.0E-06 CAAAAAGAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 77791807 77791820 9.0E-06 AAAAAGAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 77791809 77791822 1.0E-06 AAAGAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 77791811 77791824 8.0E-06 AGAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC + 77794046 77794059 4.0E-06 ACATCAGAAAAAAG 14 V_TBP_01_M00471 TRANSFAC - 77791845 77791852 8.0E-06 TATAAATT 8 V_FAC1_01_M00456 TRANSFAC + 77790350 77790363 6.0E-06 CAGCACAACACGAA 14 V_ZSCAN4_04_M02942 TRANSFAC + 77794215 77794230 3.0E-06 TCCGGCACACAAGAAC 16 V_TEF1_Q6_03_M01817 TRANSFAC - 77792032 77792040 6.0E-06 GTGGAATGT 9 V_GATA6_01_M00462 TRANSFAC - 77791183 77791192 6.0E-06 AAAGATAAAT 10 V_DOBOX5_01_M01463 TRANSFAC + 77794094 77794110 6.0E-06 AACAGGAATTAATCAAC 17 V_FPM315_01_M01587 TRANSFAC - 77794272 77794283 5.0E-06 GAGGGAGGAGGT 12 V_ASCL2_04_M02841 TRANSFAC + 77795689 77795704 6.0E-06 TCATCCCAACCCTTTT 16 V_FOX_Q2_M00809 TRANSFAC - 77792025 77792037 1.0E-06 GAATGTTTGTTAA 13 V_PBX1_03_M01017 TRANSFAC + 77790657 77790668 9.0E-06 TTATCAATCAGG 12 V_ETS1_B_M00339 TRANSFAC - 77792001 77792015 7.0E-06 GCAGGAAGTGGCTGT 15 V_MEF3_B_M00319 TRANSFAC + 77794252 77794264 3.0E-06 TGGTCAGGCTTTC 13 V_IRF1_Q6_01_M01881 TRANSFAC + 77790996 77791009 2.0E-06 AAGTTTCACTTTGC 14 V_SOX8_03_M02808 TRANSFAC - 77792152 77792168 4.0E-06 TTATCTATTGTTAGCAG 17 V_SRF_06_M02916 TRANSFAC + 77791805 77791821 4.0E-06 TCAAAAAGAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 77791806 77791822 3.0E-06 CAAAAAGAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 77791807 77791823 2.0E-06 AAAAAGAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 77791808 77791824 3.0E-06 AAAAGAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 77791809 77791825 6.0E-06 AAAGAAAAAAAAAAAGG 17 V_SRF_06_M02916 TRANSFAC + 77791810 77791826 1.0E-06 AAGAAAAAAAAAAAGGT 17 V_SRF_06_M02916 TRANSFAC + 77791811 77791827 0.0E+00 AGAAAAAAAAAAAGGTT 17 V_SRF_06_M02916 TRANSFAC + 77791812 77791828 6.0E-06 GAAAAAAAAAAAGGTTT 17 V_HFH3_01_M00289 TRANSFAC - 77792025 77792037 9.0E-06 GAATGTTTGTTAA 13 V_IRF1_01_M00062 TRANSFAC - 77790997 77791009 8.0E-06 GCAAAGTGAAACT 13 V_SOX15_04_M02903 TRANSFAC - 77791247 77791261 5.0E-06 TTTTATGGAATTTCA 15 V_HMEF2_Q6_M00406 TRANSFAC - 77791840 77791855 8.0E-06 AATTATAAATTCCTTC 16 V_GATA6_04_M02757 TRANSFAC + 77792158 77792174 5.0E-06 ACAATAGATAACAACCA 17 V_EHF_07_M02849 TRANSFAC - 77795734 77795749 8.0E-06 TAAGAATTCCGACCAC 16 V_TCF3_05_M02920 TRANSFAC + 77791808 77791822 6.0E-06 AAAAGAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 77791809 77791823 2.0E-06 AAAGAAAAAAAAAAA 15 V_STAT1_05_M01260 TRANSFAC - 77795630 77795651 8.0E-06 GTTTTCAAGGAATGGAAAGAGG 22 V_EVI1_03_M00080 TRANSFAC - 77791185 77791195 9.0E-06 TGAAAAGATAA 11 V_VDRRXR_01_M01202 TRANSFAC + 77791066 77791080 3.0E-06 GGGTCGAGGAGTACC 15 V_VDRRXR_01_M01202 TRANSFAC - 77792131 77792145 1.0E-06 GGGTCACAAGGTACA 15 V_PAX4_04_M00380 TRANSFAC + 77795646 77795675 1.0E-05 GAAAACAGCTCTAGAAACTGCTACCACACT 30 V_SMAD1_01_M01590 TRANSFAC + 77791807 77791818 3.0E-06 AAAAAGAAAAAA 12 V_ESR2_01_M02377 TRANSFAC - 77795786 77795803 8.0E-06 TAAGGTCAAGTTGTTCAG 18 V_PAX6_01_M00097 TRANSFAC + 77790396 77790416 5.0E-06 TCAGTTCCTGCTTCACTGCAC 21 V_NANOG_02_M01247 TRANSFAC + 77791803 77791822 0.0E+00 TCTCAAAAAGAAAAAAAAAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.