Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 100529215 ZNF559-ZNF177 readthrough chr19 + 9430370 - 9435870 9435370 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 9434377 9434392 7.0E-06 GAAGTTACAAAGGTCA 16 IRF7_IRF_DBD_dimeric_14_1 SELEX - 9434570 9434583 4.0E-06 TTGAAAACGAAAGC 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 9434797 9434807 1.0E-05 GCCCCGCCCCC 11 FOXA1_MA0148.1 JASPAR + 9434361 9434371 4.0E-06 TGTTTGCACAG 11 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 9434377 9434387 7.0E-06 TACAAAGGTCA 11 HSF1_HSF_full_trimeric_13_1 SELEX - 9434482 9434494 5.0E-06 TCCTAGAATTTTC 13 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 9434208 9434220 0.0E+00 AAAAGGTCAAAGG 13 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 9434796 9434809 8.0E-06 GGCCCCGCCCCCTA 14 IRF8_IRF_full_dimeric_14_1 SELEX - 9434570 9434583 2.0E-06 TTGAAAACGAAAGC 14 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 9434283 9434291 2.0E-06 TATGCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 9434283 9434291 2.0E-06 TATGCAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX - 9434280 9434293 2.0E-06 TCTATGCAAATGAA 14 STAT1_MA0137.2 JASPAR + 9434134 9434148 7.0E-06 GACTTCCTAGAACTA 15 NFYA_MA0060.1 JASPAR - 9434328 9434343 2.0E-06 AGCAACCAATCAAAGG 16 NFYA_MA0060.1 JASPAR + 9434347 9434362 1.0E-06 TGCAACCAATCAGATG 16 NFYA_MA0060.1 JASPAR + 9434414 9434429 6.0E-06 TGCAACCAATCAGACT 16 NFYA_MA0060.1 JASPAR + 9434470 9434485 7.0E-06 AGTGGCCAATGGGAAA 16 POU2F2_POU_DBD_monomeric_11_1 SELEX - 9434282 9434292 4.0E-06 CTATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 9434283 9434291 2.0E-06 TATGCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 9434283 9434291 2.0E-06 TATGCAAAT 9 TCF7L1_HMG_full_monomeric_12_1 SELEX - 9434208 9434219 0.0E+00 AAAGGTCAAAGG 12 LEF1_HMG_DBD_monomeric_15_1 SELEX - 9434205 9434219 4.0E-06 AAAGGTCAAAGGGAG 15 IRF1_MA0050.1 JASPAR - 9434570 9434581 1.0E-06 GAAAACGAAAGC 12 POU3F3_POU_DBD_monomeric_13_1 SELEX - 9434281 9434293 8.0E-06 TCTATGCAAATGA 13 SP1_MA0079.2 JASPAR + 9434798 9434807 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 9434794 9434810 1.0E-06 GAGGCCCCGCCCCCTAG 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 9434208 9434219 5.0E-06 AAAGGTCAAAGG 12 YY2_C2H2_full_monomeric_11_1 SELEX + 9434867 9434877 4.0E-06 GCCGCCATCTT 11 PBX1_MA0070.1 JASPAR - 9434330 9434341 7.0E-06 CAACCAATCAAA 12 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 9434376 9434390 1.0E-06 AGTTACAAAGGTCAC 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 9434281 9434292 5.0E-06 CTATGCAAATGA 12 Stat3_MA0144.1 JASPAR - 9434136 9434145 7.0E-06 TTCTAGGAAG 10 IRF9_IRF_full_trimeric_15_1 SELEX - 9434570 9434584 8.0E-06 GTTGAAAACGAAAGC 15 POU2F1_POU_DBD_monomeric_12_1 SELEX - 9434282 9434293 6.0E-06 TCTATGCAAATG 12 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX - 9434876 9434884 7.0E-06 CGCTGTTAA 9 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 9435203 9435214 1.0E-05 TGACAGGCGTGA 12 IRF4_IRF_full_dimeric_15_1 SELEX - 9434569 9434583 2.0E-06 TTGAAAACGAAAGCA 15 EGR2_C2H2_DBD_monomeric_11_1 SELEX - 9434844 9434854 9.0E-06 GCGCCCACGCA 11 NRF1_NRF_full_dimeric_12_1 SELEX - 9434825 9434836 5.0E-06 CGCGCACGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX + 9434850 9434861 6.0E-06 GGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 9434850 9434861 1.0E-06 TGCGCATGCGCC 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 9434281 9434292 3.0E-06 CTATGCAAATGA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 9434569 9434581 1.0E-05 GAAAACGAAAGCA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 9434908 9434920 1.0E-05 AGAAACAAAAACT 13 IRF2_MA0051.1 JASPAR - 9434565 9434582 0.0E+00 TGAAAACGAAAGCATACT 18 V_BCL6_Q3_01_M02085 TRANSFAC + 9434136 9434145 2.0E-06 CTTCCTAGAA 10 V_NFY_Q6_M00185 TRANSFAC + 9434349 9434359 6.0E-06 CAACCAATCAG 11 V_NFY_Q6_M00185 TRANSFAC + 9434416 9434426 6.0E-06 CAACCAATCAG 11 V_ZFX_01_M01593 TRANSFAC - 9435107 9435122 8.0E-06 GCCGAGGCCCCAGCGC 16 V_SP1_Q6_01_M00931 TRANSFAC - 9434797 9434806 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC + 9434281 9434291 1.0E-06 TCATTTGCATA 11 V_NR2F2_03_M02783 TRANSFAC - 9434208 9434223 3.0E-06 CAGAAAAGGTCAAAGG 16 V_NR2F2_03_M02783 TRANSFAC - 9434373 9434388 3.0E-06 TTACAAAGGTCACACT 16 V_IRF2_Q6_M01882 TRANSFAC - 9434568 9434583 3.0E-06 TTGAAAACGAAAGCAT 16 V_POU2F3_01_M01476 TRANSFAC - 9434279 9434294 0.0E+00 TTCTATGCAAATGAAG 16 V_SOX11_04_M02899 TRANSFAC - 9435432 9435445 3.0E-06 AGAATTGTCAGGTT 14 V_EAR2_Q2_M01728 TRANSFAC + 9434205 9434218 2.0E-06 CTCCCTTTGACCTT 14 V_HNF3_Q6_01_M01012 TRANSFAC + 9434616 9434633 4.0E-06 TTCTTTCTTTGCTTTGCT 18 V_STAT5B_01_M00459 TRANSFAC - 9434134 9434148 9.0E-06 TAGTTCTAGGAAGTC 15 V_SP1_03_M02281 TRANSFAC + 9434798 9434807 7.0E-06 CCCCGCCCCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 9434478 9434489 4.0E-06 GAATTTTCCCAT 12 V_OCT_C_M00210 TRANSFAC + 9434280 9434292 1.0E-06 TTCATTTGCATAG 13 V_TR4_Q2_M01725 TRANSFAC + 9434375 9434385 4.0E-06 TGTGACCTTTG 11 V_NFY_Q6_01_M00775 TRANSFAC - 9434332 9434344 4.0E-06 AAGCAACCAATCA 13 V_NFY_Q6_01_M00775 TRANSFAC + 9434346 9434358 9.0E-06 TTGCAACCAATCA 13 V_NFY_C_M00209 TRANSFAC + 9434330 9434343 0.0E+00 TTTGATTGGTTGCT 14 V_NFY_C_M00209 TRANSFAC - 9434347 9434360 0.0E+00 TCTGATTGGTTGCA 14 V_NFY_C_M00209 TRANSFAC - 9434414 9434427 0.0E+00 TCTGATTGGTTGCA 14 V_RPC155_01_M01798 TRANSFAC + 9435258 9435273 0.0E+00 CCAGGAGTTCAAGACC 16 V_GC_01_M00255 TRANSFAC - 9434795 9434808 0.0E+00 AGGGGGCGGGGCCT 14 V_SOX7_03_M02807 TRANSFAC - 9434595 9434616 8.0E-06 ATGAAGCAACAAAAGAACAAGA 22 V_TCF3_04_M02816 TRANSFAC - 9434646 9434662 2.0E-06 TTTTGAACAAAGAATTA 17 V_RFX1_01_M00280 TRANSFAC + 9434303 9434319 8.0E-06 TTGTAACGTCGTAACTT 17 V_SP4_03_M02810 TRANSFAC + 9434796 9434812 7.0E-06 GGCCCCGCCCCCTAGGT 17 V_SP1_Q6_M00196 TRANSFAC - 9434796 9434808 0.0E+00 AGGGGGCGGGGCC 13 V_OCT1_05_M00161 TRANSFAC + 9435144 9435157 8.0E-06 GGCCTTTCCATTTT 14 V_IRC900814_04_M02870 TRANSFAC + 9434303 9434318 9.0E-06 TTGTAACGTCGTAACT 16 V_IRF_Q6_M00772 TRANSFAC + 9434567 9434581 6.0E-06 TATGCTTTCGTTTTC 15 V_STAT5A_02_M00460 TRANSFAC + 9434137 9434160 4.0E-06 TTCCTAGAACTAAATTGAAAGGAA 24 V_SOX_Q6_M01014 TRANSFAC + 9434649 9434661 4.0E-06 TTCTTTGTTCAAA 13 V_BCL6_Q3_M01171 TRANSFAC - 9434138 9434147 8.0E-06 AGTTCTAGGA 10 V_NKX52_01_M01315 TRANSFAC - 9434326 9434342 7.0E-06 GCAACCAATCAAAGGCT 17 V_PBX1_01_M00096 TRANSFAC - 9434331 9434339 1.0E-05 ACCAATCAA 9 V_YY1_Q6_02_M01035 TRANSFAC + 9434867 9434877 7.0E-06 GCCGCCATCTT 11 V_OCT1_04_M00138 TRANSFAC - 9434276 9434298 2.0E-06 ACACTTCTATGCAAATGAAGACT 23 V_REX1_03_M01744 TRANSFAC - 9434866 9434877 0.0E+00 AAGATGGCGGCC 12 V_SP1SP3_Q4_M01219 TRANSFAC - 9435126 9435136 5.0E-06 CCGCCTCCTCC 11 V_DAX1_01_M01248 TRANSFAC - 9434371 9434390 8.0E-06 AGTTACAAAGGTCACACTCC 20 V_TCF7_03_M02817 TRANSFAC - 9434646 9434662 3.0E-06 TTTTGAACAAAGAATTA 17 V_STAT3_03_M01595 TRANSFAC - 9434132 9434147 3.0E-06 AGTTCTAGGAAGTCGG 16 V_SOX11_03_M02795 TRANSFAC - 9434646 9434662 0.0E+00 TTTTGAACAAAGAATTA 17 V_NR1B1_Q6_M02110 TRANSFAC - 9434210 9434219 0.0E+00 AAAGGTCAAA 10 V_NR1B1_Q6_M02110 TRANSFAC - 9434375 9434384 3.0E-06 AAAGGTCACA 10 V_OCT1_B_M00342 TRANSFAC - 9434282 9434291 2.0E-06 TATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC + 9434281 9434291 0.0E+00 TCATTTGCATA 11 V_ICSBP_Q6_M00699 TRANSFAC - 9434569 9434580 7.0E-06 AAAACGAAAGCA 12 V_SP4_Q5_M01273 TRANSFAC + 9434797 9434807 1.0E-06 GCCCCGCCCCC 11 V_HBP1_04_M02866 TRANSFAC - 9434470 9434486 1.0E-06 TTTTCCCATTGGCCACT 17 V_CAAT_01_M00254 TRANSFAC - 9434332 9434343 5.0E-06 AGCAACCAATCA 12 V_CAAT_01_M00254 TRANSFAC + 9434347 9434358 6.0E-06 TGCAACCAATCA 12 V_CAAT_01_M00254 TRANSFAC + 9434414 9434425 6.0E-06 TGCAACCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC + 9434349 9434359 3.0E-06 CAACCAATCAG 11 V_ALPHACP1_01_M00687 TRANSFAC + 9434416 9434426 3.0E-06 CAACCAATCAG 11 V_NFYC_Q5_M02107 TRANSFAC + 9434416 9434429 3.0E-06 CAACCAATCAGACT 14 V_OCT2_01_M01368 TRANSFAC - 9434279 9434294 0.0E+00 TTCTATGCAAATGAAG 16 V_ERR1_Q2_M00511 TRANSFAC - 9434375 9434388 8.0E-06 TTACAAAGGTCACA 14 V_PARP_Q3_M01211 TRANSFAC + 9434756 9434765 8.0E-06 TTGGAAAAAG 10 V_ZFP206_01_M01742 TRANSFAC + 9434825 9434835 7.0E-06 TGCGCGTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 9434826 9434836 9.0E-06 CGCGCACGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 9434851 9434861 0.0E+00 TGCGCATGCGC 11 V_NFY_01_M00287 TRANSFAC - 9434328 9434343 1.0E-06 AGCAACCAATCAAAGG 16 V_NFY_01_M00287 TRANSFAC + 9434347 9434362 1.0E-06 TGCAACCAATCAGATG 16 V_NFY_01_M00287 TRANSFAC + 9434414 9434429 1.0E-05 TGCAACCAATCAGACT 16 V_NFY_01_M00287 TRANSFAC + 9434470 9434485 9.0E-06 AGTGGCCAATGGGAAA 16 V_BDP1_01_M01796 TRANSFAC - 9435262 9435273 2.0E-06 GGTCTTGAACTC 12 V_RBPJK_01_M01112 TRANSFAC - 9434550 9434560 7.0E-06 AGTGTGGGAAC 11 V_NRF1_Q6_M00652 TRANSFAC + 9434852 9434861 2.0E-06 CGCATGCGCA 10 V_RARA_03_M02787 TRANSFAC - 9434208 9434223 7.0E-06 CAGAAAAGGTCAAAGG 16 V_RARA_03_M02787 TRANSFAC - 9434373 9434388 1.0E-06 TTACAAAGGTCACACT 16 V_DMRT2_01_M01147 TRANSFAC + 9434291 9434306 9.0E-06 AGAAGTGTAACTTTGT 16 V_STAT5A_01_M00457 TRANSFAC + 9434134 9434148 6.0E-06 GACTTCCTAGAACTA 15 V_STAT5A_01_M00457 TRANSFAC - 9434134 9434148 3.0E-06 TAGTTCTAGGAAGTC 15 V_NUR77_Q5_M01217 TRANSFAC + 9434211 9434220 2.0E-06 TTGACCTTTT 10 V_SRF_06_M02916 TRANSFAC - 9434906 9434922 5.0E-06 CCAGAAACAAAAACTTA 17 V_HSF2_02_M01244 TRANSFAC + 9434482 9434494 2.0E-06 GAAAATTCTAGGA 13 V_SOX12_03_M02796 TRANSFAC + 9434650 9434663 1.0E-05 TCTTTGTTCAAAAC 14 V_SP1_Q2_01_M00933 TRANSFAC + 9434798 9434807 4.0E-06 CCCCGCCCCC 10 V_ARP1_01_M00155 TRANSFAC - 9435253 9435268 2.0E-06 TGAACTCCTGGCCTCA 16 V_SOX5_07_M02909 TRANSFAC - 9435432 9435448 7.0E-06 GACAGAATTGTCAGGTT 17 V_NFYA_Q5_M02106 TRANSFAC - 9434328 9434341 2.0E-06 CAACCAATCAAAGG 14 V_NFYA_Q5_M02106 TRANSFAC + 9434349 9434362 1.0E-06 CAACCAATCAGATG 14 V_NFYA_Q5_M02106 TRANSFAC + 9434416 9434429 9.0E-06 CAACCAATCAGACT 14 V_SP1_Q4_01_M00932 TRANSFAC - 9434796 9434808 0.0E+00 AGGGGGCGGGGCC 13 V_STAT1_05_M01260 TRANSFAC + 9434134 9434155 4.0E-06 GACTTCCTAGAACTAAATTGAA 22 V_DMRT5_01_M01150 TRANSFAC + 9434293 9434307 8.0E-06 AAGTGTAACTTTGTA 15 V_NANOG_02_M01247 TRANSFAC - 9434597 9434616 3.0E-06 ATGAAGCAACAAAAGAACAA 20 V_HSF1_Q6_01_M02017 TRANSFAC + 9434482 9434495 2.0E-06 GAAAATTCTAGGAG 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.