Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C9orf174 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 100499483 coiled-coil domain containing 180 chr9 + 100064909 - 100070409 100069909 Transcription Factor Binding Sites   Download all TFBS in the C9orf174 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR + 100069552 100069562 4.0E-06 AGCGTGGGCGG 11 RFX4_RFX_DBD_dimeric_16_1 SELEX + 100069587 100069602 8.0E-06 CGTTGCCTTGGAGACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 100069587 100069602 6.0E-06 GGTCTCCAAGGCAACG 16 EGR1_C2H2_full_monomeric_14_1 SELEX - 100069550 100069563 4.0E-06 CCCGCCCACGCTTT 14 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 100069587 100069602 5.0E-06 CGTTGCCTTGGAGACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 100069587 100069602 7.0E-06 GGTCTCCAAGGCAACG 16 EGR2_C2H2_full_monomeric_15_1 SELEX - 100069550 100069564 2.0E-06 CCCCGCCCACGCTTT 15 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 100069549 100069563 3.0E-06 CCCGCCCACGCTTTT 15 SP1_C2H2_DBD_monomeric_11_1 SELEX - 100069555 100069565 1.0E-05 GCCCCGCCCAC 11 Mycn_MA0104.2 JASPAR - 100069499 100069508 8.0E-06 CCCACGTGGC 10 EGR4_C2H2_DBD_monomeric_16_2 SELEX - 100069549 100069564 2.0E-06 CCCCGCCCACGCTTTT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 100069587 100069602 4.0E-06 CGTTGCCTTGGAGACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 100069587 100069602 6.0E-06 GGTCTCCAAGGCAACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 100069587 100069602 7.0E-06 CGTTGCCTTGGAGACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 100069587 100069602 5.0E-06 GGTCTCCAAGGCAACG 16 Myf_MA0055.1 JASPAR - 100069615 100069626 8.0E-06 CGACAACTGCAG 12 EGR2_C2H2_DBD_monomeric_11_1 SELEX - 100069552 100069562 5.0E-06 CCGCCCACGCT 11 V_P50P50_Q3_M01223 TRANSFAC - 100069567 100069579 4.0E-06 GAGGGACTGCCCC 13 V_EGR1_02_M01972 TRANSFAC + 100069552 100069562 6.0E-06 AGCGTGGGCGG 11 V_CEBPB_01_M00109 TRANSFAC - 100070248 100070261 9.0E-06 AGGTTGGGAAATCG 14 V_EGR1_01_M00243 TRANSFAC + 100069551 100069562 5.0E-06 AAGCGTGGGCGG 12 V_MYF_01_M01302 TRANSFAC - 100069615 100069626 8.0E-06 CGACAACTGCAG 12 V_NGFIC_01_M00244 TRANSFAC + 100069551 100069562 2.0E-06 AAGCGTGGGCGG 12 V_SP1_Q6_M00196 TRANSFAC + 100069554 100069566 8.0E-06 CGTGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 100069575 100069588 1.0E-06 CGCGGAGGGGAGGG 14 V_EGR1_Q6_M01873 TRANSFAC + 100069553 100069562 7.0E-06 GCGTGGGCGG 10 V_MYCN_01_M02259 TRANSFAC - 100069499 100069508 8.0E-06 CCCACGTGGC 10 V_EGR2_01_M00246 TRANSFAC + 100069551 100069562 7.0E-06 AAGCGTGGGCGG 12 V_SP4_Q5_M01273 TRANSFAC - 100069555 100069565 9.0E-06 GCCCCGCCCAC 11 V_EGR1_06_M02744 TRANSFAC - 100069550 100069563 1.0E-06 CCCGCCCACGCTTT 14 V_RFX3_05_M02892 TRANSFAC + 100069586 100069608 9.0E-06 GCGTTGCCTTGGAGACCATGGGC 23 V_SP1_Q4_01_M00932 TRANSFAC + 100069554 100069566 4.0E-06 CGTGGGCGGGGCC 13 V_CEBPG_Q6_01_M01869 TRANSFAC - 100070249 100070260 2.0E-06 GGTTGGGAAATC 12 V_EGR3_01_M00245 TRANSFAC + 100069551 100069562 3.0E-06 AAGCGTGGGCGG 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.