Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PDCD6IP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 10015 programmed cell death 6 interacting protein chr3 + 33835062 - 33840562 33840062 Transcription Factor Binding Sites   Download all TFBS in the PDCD6IP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ESR2_MA0258.1 JASPAR + 33839773 33839790 2.0E-06 ATAGGTCACAATAACCCT 18 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 33839990 33840003 2.0E-06 GGCTACGCCCACCT 14 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 33839761 33839771 8.0E-06 TGAATAAACAT 11 EWSR1-FLI1_MA0149.1 JASPAR + 33839916 33839933 3.0E-06 GGAAGGAGGAAGGGAAGA 18 Foxq1_MA0040.1 JASPAR - 33839763 33839773 2.0E-06 TGATGTTTATT 11 ESR1_MA0112.2 JASPAR + 33839770 33839789 7.0E-06 ATCATAGGTCACAATAACCC 20 znf143_MA0088.1 JASPAR - 33840842 33840861 7.0E-06 CACTTCCCCCACTGCCTTCA 20 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 33839766 33839777 1.0E-05 AAACATCATAGG 12 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 33839774 33839790 1.0E-06 TAGGTCACAATAACCCT 17 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 33839774 33839790 5.0E-06 AGGGTTATTGTGACCTA 17 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 33840015 33840024 9.0E-06 GTCACGTGAA 10 PPARG_MA0066.1 JASPAR + 33839773 33839792 8.0E-06 ATAGGTCACAATAACCCTGG 20 SPI1_ETS_full_monomeric_14_1 SELEX - 33840768 33840781 9.0E-06 CGAAAGGGGAAGCT 14 MLX_bHLH_full_dimeric_10_1 SELEX + 33840015 33840024 9.0E-06 TTCACGTGAC 10 PLAG1_MA0163.1 JASPAR - 33840772 33840785 5.0E-06 GGGGCGAAAGGGGA 14 POU3F3_POU_DBD_dimeric_12_1 SELEX + 33839760 33839771 5.0E-06 TTGAATAAACAT 12 NRF1_NRF_full_dimeric_12_1 SELEX + 33840054 33840065 1.0E-05 TGCGCCTGCGCT 12 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 33840015 33840024 8.0E-06 TTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 33840015 33840024 6.0E-06 GTCACGTGAA 10 V_ELF5_02_M01980 TRANSFAC + 33840072 33840081 5.0E-06 CCCGGAAGTT 10 V_NFAT_Q4_01_M00935 TRANSFAC - 33840786 33840795 7.0E-06 ATGGAAAAAT 10 V_HNF3B_01_M00131 TRANSFAC + 33840719 33840733 8.0E-06 TGCCACATTTACTTA 15 V_FREAC7_01_M00293 TRANSFAC + 33839759 33839774 5.0E-06 GTTGAATAAACATCAT 16 V_ESR1_01_M02261 TRANSFAC + 33839770 33839789 7.0E-06 ATCATAGGTCACAATAACCC 20 V_CEBP_Q3_M00770 TRANSFAC - 33840717 33840728 5.0E-06 AAATGTGGCAAA 12 V_DEAF1_01_M01001 TRANSFAC - 33840068 33840092 3.0E-06 CCGGGTCCGGCAACTTCCGGGAGCT 25 V_ELF1_01_M01975 TRANSFAC + 33840072 33840081 8.0E-06 CCCGGAAGTT 10 V_HOXD1_01_M01448 TRANSFAC + 33841897 33841913 1.0E-05 TAAGTTAATTGCCCTTA 17 V_MAF_Q6_M00648 TRANSFAC - 33840495 33840510 9.0E-06 TTGAAGGAAGGGGGGA 16 V_HOXA2_01_M01402 TRANSFAC - 33841896 33841911 4.0E-06 AGGGCAATTAACTTAG 16 V_PU1_Q4_M01172 TRANSFAC - 33839917 33839935 3.0E-06 ATTCTTCCCTTCCTCCTTC 19 V_NFAT2_01_M01748 TRANSFAC - 33840787 33840795 3.0E-06 ATGGAAAAA 9 V_ZFP691_03_M02833 TRANSFAC + 33839887 33839903 1.0E-05 GTGAAAGTGCTCAGTAC 17 V_TCFAP2C_04_M02925 TRANSFAC - 33840647 33840660 3.0E-06 CCGACCAAGGGCTA 14 V_ELF2_02_M02054 TRANSFAC + 33840072 33840081 4.0E-06 CCCGGAAGTT 10 V_RPC155_01_M01798 TRANSFAC + 33843069 33843084 5.0E-06 CCACGAGTTGGAGACC 16 V_ELF4_04_M02850 TRANSFAC + 33843111 33843127 6.0E-06 TCTCAAAACAAAACAAA 17 V_HOXA6_01_M01392 TRANSFAC - 33841896 33841911 9.0E-06 AGGGCAATTAACTTAG 16 V_NFAT_Q6_M00302 TRANSFAC - 33840786 33840797 1.0E-05 TGATGGAAAAAT 12 V_HOXA1_01_M01487 TRANSFAC + 33841896 33841911 6.0E-06 CTAAGTTAATTGCCCT 16 V_CDX2_01_M01449 TRANSFAC - 33841897 33841912 3.0E-06 AAGGGCAATTAACTTA 16 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 33839760 33839770 7.0E-06 TGTTTATTCAA 11 V_GSH2_01_M01326 TRANSFAC - 33841896 33841911 6.0E-06 AGGGCAATTAACTTAG 16 V_EHF_02_M01974 TRANSFAC + 33840072 33840081 8.0E-06 CCCGGAAGTT 10 V_CDX1_01_M01373 TRANSFAC - 33841897 33841912 3.0E-06 AAGGGCAATTAACTTA 16 V_EVI1_Q3_M02002 TRANSFAC + 33845062 33845070 6.0E-06 TTTCTTGTC 1 V_SPIB_01_M01204 TRANSFAC - 33840765 33840781 3.0E-06 CGAAAGGGGAAGCTTCA 17 V_ERALPHA_01_M01801 TRANSFAC + 33839775 33839789 1.0E-06 AGGTCACAATAACCC 15 V_ERALPHA_01_M01801 TRANSFAC - 33839775 33839789 1.0E-06 GGGTTATTGTGACCT 15 V_XFD2_01_M00268 TRANSFAC + 33839761 33839774 5.0E-06 TGAATAAACATCAT 14 V_PNR_01_M01650 TRANSFAC + 33839767 33839780 1.0E-06 AACATCATAGGTCA 14 V_HFH1_01_M00129 TRANSFAC - 33839762 33839773 5.0E-06 TGATGTTTATTC 12 V_ELF4_01_M01979 TRANSFAC + 33840072 33840081 8.0E-06 CCCGGAAGTT 10 V_ISGF4G_04_M02875 TRANSFAC - 33839950 33839963 2.0E-06 GCAAAATATTACTT 14 V_ISGF4G_04_M02875 TRANSFAC + 33843113 33843126 6.0E-06 TCAAAACAAAACAA 14 V_HFH8_01_M00294 TRANSFAC - 33839761 33839773 5.0E-06 TGATGTTTATTCA 13 V_HIF1_Q3_M00797 TRANSFAC - 33840631 33840644 9.0E-06 GCAGACGTGCAGGC 14 V_EHF_06_M02745 TRANSFAC + 33840068 33840082 6.0E-06 AGCTCCCGGAAGTTG 15 V_HOXB8_01_M01451 TRANSFAC - 33841897 33841912 5.0E-06 AAGGGCAATTAACTTA 16 V_STRA13_01_M00985 TRANSFAC + 33840013 33840026 4.0E-06 CCTTCACGTGACCG 14 V_CAAT_C_M00200 TRANSFAC - 33840848 33840872 3.0E-06 CCCAATTCCCCCACTTCCCCCACTG 25 V_FOXL1_02_M02857 TRANSFAC + 33843110 33843125 1.0E-06 GTCTCAAAACAAAACA 16 V_FOXJ3_06_M02855 TRANSFAC + 33843109 33843125 9.0E-06 TGTCTCAAAACAAAACA 17 V_NANOG_01_M01123 TRANSFAC - 33841887 33841898 1.0E-05 TAGCCCATTTCC 12 V_CPHX_01_M01478 TRANSFAC - 33840818 33840831 5.0E-06 ATTATGAAATCAAA 14 V_ZFP206_01_M01742 TRANSFAC + 33840054 33840064 8.0E-06 TGCGCCTGCGC 11 V_STAT1STAT1_Q3_M01212 TRANSFAC - 33839881 33839893 7.0E-06 CTTTCACGTAAGA 13 V_CEBPB_Q6_M01896 TRANSFAC - 33840821 33840830 4.0E-06 TTATGAAATC 10 V_DMRT2_01_M01147 TRANSFAC - 33839947 33839962 2.0E-06 CAAAATATTACTTTCT 16 V_PBX_Q3_M00998 TRANSFAC - 33840501 33840512 9.0E-06 GATTGAAGGAAG 12 V_HFH3_01_M00289 TRANSFAC - 33839761 33839773 9.0E-06 TGATGTTTATTCA 13 V_VAX1_01_M01397 TRANSFAC - 33841896 33841911 2.0E-06 AGGGCAATTAACTTAG 16 V_EWSR1FLI1_01_M02252 TRANSFAC + 33839916 33839933 3.0E-06 GGAAGGAGGAAGGGAAGA 18 V_FOXJ2_01_M00422 TRANSFAC + 33839758 33839775 7.0E-06 AGTTGAATAAACATCATA 18 V_VDR_Q3_M00444 TRANSFAC + 33840861 33840875 1.0E-05 GGGGGAATTGGGACA 15 V_MOX1_01_M01443 TRANSFAC - 33841896 33841911 3.0E-06 AGGGCAATTAACTTAG 16 V_BSX_01_M01442 TRANSFAC - 33841896 33841911 2.0E-06 AGGGCAATTAACTTAG 16 V_HOXD3_01_M01338 TRANSFAC + 33841896 33841911 2.0E-06 CTAAGTTAATTGCCCT 16 V_FREAC4_01_M00292 TRANSFAC + 33839759 33839774 2.0E-06 GTTGAATAAACATCAT 16 V_CEBPE_01_M01772 TRANSFAC - 33840822 33840831 8.0E-06 ATTATGAAAT 10 V_DEC_Q1_M00997 TRANSFAC - 33840013 33840025 8.0E-06 GGTCACGTGAAGG 13 V_ESR2_01_M02377 TRANSFAC + 33839773 33839790 2.0E-06 ATAGGTCACAATAACCCT 18 V_HOX13_02_M01452 TRANSFAC - 33841896 33841911 5.0E-06 AGGGCAATTAACTTAG 16 V_NANOG_02_M01247 TRANSFAC - 33836173 33836192 1.0E-06 GGTGAAGAACAAAAGGAAAA 20 V_NANOG_02_M01247 TRANSFAC + 33843110 33843129 8.0E-06 GTCTCAAAACAAAACAAAAC 20 V_HOXC9_01_M01416 TRANSFAC - 33841897 33841912 8.0E-06 AAGGGCAATTAACTTA 16 V_ER_Q6_M00191 TRANSFAC - 33839773 33839791 2.0E-06 CAGGGTTATTGTGACCTAT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.