Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KRTAP4-7 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 100132476 keratin associated protein 4-7 chr17 + 39235458 - 39240958 39240458 Transcription Factor Binding Sites   Download all TFBS in the KRTAP4-7 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FLI1_ETS_full_monomeric_10_1 SELEX - 39238903 39238912 3.0E-06 ACCGGAAATA 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 7.0E-06 ACCGGAAATA 10 ERG_ETS_full_monomeric_10_1 SELEX - 39238903 39238912 3.0E-06 ACCGGAAATA 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 7.0E-06 ACCGGAAATA 10 Zfp423_MA0116.1 JASPAR - 39240682 39240696 1.0E-06 AGCACCTAGGGTGGC 15 FOXL1_forkhead_full_dimeric_13_1 SELEX + 39238889 39238901 4.0E-06 ATTCAACAAACAT 13 FEV_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 3.0E-06 ACCGGAAATA 10 ETV1_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 3.0E-06 ACCGGAAATA 10 POU3F4_POU_DBD_monomeric_9_1 SELEX - 39238973 39238981 7.0E-06 AATGCAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 39238893 39238906 0.0E+00 AACAAACATTTATT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 39238893 39238906 1.0E-06 AATAAATGTTTGTT 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 39244694 39244707 8.0E-06 CTCCTTATCATTAG 14 TEAD1_TEA_full_monomeric_10_1 SELEX + 39239168 39239177 3.0E-06 CACATTCCAA 10 ETV2_ETS_DBD_monomeric_11_1 SELEX - 39238903 39238913 1.0E-06 CACCGGAAATA 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 39238893 39238906 1.0E-06 AACAAACATTTATT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 39238893 39238906 3.0E-06 AATAAATGTTTGTT 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 39239104 39239118 7.0E-06 AGGAAATATTTAACT 15 ETS1_ETS_full_monomeric_10_1 SELEX - 39238903 39238912 1.0E-06 ACCGGAAATA 10 ETV4_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 1.0E-06 ACCGGAAATA 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 3.0E-06 ACCGGAAATA 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 39238893 39238906 8.0E-06 AACAAACATTTATT 14 ELK4_MA0076.1 JASPAR - 39238904 39238912 7.0E-06 ACCGGAAAT 9 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 39238890 39238900 9.0E-06 TTCAACAAACA 11 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 39239169 39239176 1.0E-05 ACATTCCA 8 ERF_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 3.0E-06 ACCGGAAATA 10 ELK1_ETS_full_monomeric_10_1 SELEX - 39238903 39238912 5.0E-06 ACCGGAAATA 10 FEV_MA0156.1 JASPAR + 39239050 39239057 1.0E-05 CAGGAAAT 8 FEV_MA0156.1 JASPAR - 39244503 39244510 1.0E-05 CAGGAAAT 8 Hltf_MA0109.1 JASPAR + 39238896 39238905 1.0E-05 AAACATTTAT 10 Myf_MA0055.1 JASPAR - 39240701 39240712 4.0E-06 CAGCAGCTGGAG 12 Myf_MA0055.1 JASPAR - 39240704 39240715 5.0E-06 CGGCAGCAGCTG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 39238993 39239008 2.0E-06 AATGAAAGAAGTAAAC 16 GABPA_ETS_full_monomeric_10_1 SELEX - 39238903 39238912 5.0E-06 ACCGGAAATA 10 Elk3_ETS_DBD_monomeric_10_1 SELEX - 39238903 39238912 5.0E-06 ACCGGAAATA 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 39239168 39239177 4.0E-06 CACATTCCAA 10 ELF5_MA0136.1 JASPAR + 39239870 39239878 9.0E-06 AACTTCCTT 9 ELF5_MA0136.1 JASPAR + 39244479 39244487 4.0E-06 TACTTCCTT 9 HNF1A_MA0046.1 JASPAR - 39239105 39239118 3.0E-06 AGTTAAATATTTCC 14 TEAD1_MA0090.1 JASPAR - 39239019 39239030 9.0E-06 TACATTCTACTG 12 V_ELF5_02_M01980 TRANSFAC - 39238903 39238912 7.0E-06 ACCGGAAATA 10 V_DMRT4_01_M01149 TRANSFAC + 39239025 39239037 3.0E-06 AATGTATCACATT 13 V_RUSH1A_02_M01107 TRANSFAC + 39238896 39238905 1.0E-05 AAACATTTAT 10 V_HOXA9_01_M01351 TRANSFAC - 39244471 39244487 7.0E-06 AAGGAAGTAAAATAAAT 17 V_FOXP1_01_M00987 TRANSFAC + 39244740 39244759 1.0E-06 TTGTTTGTTTTGGTCTTTCT 20 V_ERG_03_M02062 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_ERM_01_M01992 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_SAP1A_01_M01167 TRANSFAC - 39238903 39238913 3.0E-06 CACCGGAAATA 11 V_STAT5A_Q6_M01890 TRANSFAC - 39239172 39239184 9.0E-06 CATCTTCTTGGAA 13 V_AR_02_M00953 TRANSFAC + 39239198 39239224 3.0E-06 AAGCTTAGCAAATTTTGTTCTTTACCA 27 V_AR_02_M00953 TRANSFAC + 39244723 39244749 8.0E-06 TATTGTTGGACATTTTGTTGTTTGTTT 27 V_GABPA_02_M02074 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 TAL1_TCF3_MA0091.1 JASPAR + 39244674 39244685 7.0E-06 CAACCAGCTGGT 12 TAL1_TCF3_MA0091.1 JASPAR - 39244676 39244687 4.0E-06 AGACCAGCTGGT 12 V_BCL6B_03_M02740 TRANSFAC - 39239168 39239183 8.0E-06 ATCTTCTTGGAATGTG 16 V_NF1_Q6_01_M00806 TRANSFAC - 39244657 39244673 3.0E-06 TTAAACTTTAGCCAAGA 17 V_MAFB_05_M02775 TRANSFAC - 39238863 39238879 6.0E-06 CTTTTTGATGACATAGA 17 V_CETS1_01_M01986 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_ETS_B_M00340 TRANSFAC + 39239101 39239114 3.0E-06 AGGAGGAAATATTT 14 V_NERF_01_M01976 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_GATA3_03_M00351 TRANSFAC + 39239088 39239097 1.0E-06 AAAGATATTA 10 V_SPIB_02_M02041 TRANSFAC - 39244479 39244488 4.0E-06 AAAGGAAGTA 10 V_STAT_Q6_M00777 TRANSFAC - 39239173 39239185 6.0E-06 TCATCTTCTTGGA 13 V_ESE1_01_M01977 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_SATB1_Q3_M01723 TRANSFAC + 39239052 39239067 0.0E+00 GGAAATAATGATAAAT 16 V_ETV3_01_M01990 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_ELF1_01_M01975 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_ISL2_01_M01328 TRANSFAC + 39239868 39239883 4.0E-06 ATAACTTCCTTAAGAT 16 V_NFAT3_Q3_M01734 TRANSFAC + 39244575 39244584 6.0E-06 TTTTTTTCCT 10 V_HTF_01_M00538 TRANSFAC + 39238938 39238961 5.0E-06 ACAAAAAGAAACGTCATAGCCCAT 24 V_AP4_Q6_02_M01860 TRANSFAC + 39240703 39240715 4.0E-06 CCAGCTGCTGCCG 13 V_TCFAP2E_04_M02926 TRANSFAC - 39244574 39244587 7.0E-06 AGCAGGAAAAAAAC 14 V_CDX_Q5_M00991 TRANSFAC - 39239865 39239882 8.0E-06 TCTTAAGGAAGTTATAAA 18 V_CETS2_02_M02064 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_NKX62_Q2_M00489 TRANSFAC - 39238897 39238908 1.0E-05 GAAATAAATGTT 12 V_CDP_04_M01344 TRANSFAC + 39239054 39239068 2.0E-06 AAATAATGATAAATG 15 V_PEA3_01_M01991 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_CETS1P54_02_M00074 TRANSFAC - 39238902 39238914 1.0E-06 ACACCGGAAATAA 13 V_HNF1_C_M00206 TRANSFAC - 39244659 39244675 2.0E-06 TGTTAAACTTTAGCCAA 17 V_HNF1_C_M00206 TRANSFAC + 39244661 39244677 6.0E-06 GGCTAAAGTTTAACAAC 17 V_ELF2_02_M02054 TRANSFAC - 39238903 39238912 5.0E-06 ACCGGAAATA 10 V_SPIC_01_M02042 TRANSFAC - 39244479 39244488 4.0E-06 AAAGGAAGTA 10 V_TAL1_Q6_M00993 TRANSFAC + 39240702 39240711 3.0E-06 TCCAGCTGCT 10 V_FLI1_01_M02038 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_ELK1_06_M02059 TRANSFAC - 39238903 39238912 5.0E-06 ACCGGAAATA 10 V_ETV7_01_M02071 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_IPF1_Q4_M00436 TRANSFAC + 39239053 39239064 8.0E-06 GAAATAATGATA 12 V_MYF_01_M01302 TRANSFAC - 39240701 39240712 4.0E-06 CAGCAGCTGGAG 12 V_MYF_01_M01302 TRANSFAC - 39240704 39240715 5.0E-06 CGGCAGCAGCTG 12 V_ELK1_05_M01981 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_GCM1_04_M02862 TRANSFAC + 39238979 39238995 5.0E-06 ATTGCATATGGGGGAAT 17 V_HOXB13_01_M01467 TRANSFAC - 39239108 39239123 9.0E-06 AACCCAGTTAAATATT 16 V_SAP1A_02_M01983 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_FLI1_02_M02073 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_PET1_02_M02072 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_E2F1_01_M01250 TRANSFAC - 39238943 39238950 1.0E-05 CGTTTCTT 8 V_RFX1_01_M00280 TRANSFAC + 39238925 39238941 7.0E-06 GAGTATCATGGTAACAA 17 V_ERF_01_M01984 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_ER81_02_M02065 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_HNF3_Q6_M00791 TRANSFAC + 39238890 39238902 6.0E-06 TTCAACAAACATT 13 V_ERG_01_M01752 TRANSFAC - 39238904 39238912 7.0E-06 ACCGGAAAT 9 V_CDX2_Q5_M00729 TRANSFAC + 39244665 39244678 8.0E-06 AAAGTTTAACAACC 14 V_GABPA_01_M02039 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_HNF1_Q6_01_M01011 TRANSFAC + 39239101 39239121 8.0E-06 AGGAGGAAATATTTAACTGGG 21 V_CETS2_01_M01989 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_EHF_02_M01974 TRANSFAC - 39238903 39238912 8.0E-06 ACCGGAAATA 10 V_ASCL2_03_M02737 TRANSFAC + 39240714 39240730 8.0E-06 CGCCCCAGCTGCTGTAT 17 V_ELF5_01_M01197 TRANSFAC - 39239870 39239880 1.0E-06 TTAAGGAAGTT 11 V_ELF5_01_M01197 TRANSFAC - 39244479 39244489 1.0E-06 TAAAGGAAGTA 11 V_CUX1_04_M02959 TRANSFAC + 39239054 39239068 2.0E-06 AAATAATGATAAATG 15 V_OCT1_04_M00138 TRANSFAC + 39244801 39244823 3.0E-06 AAGTGAGAATTCAAAATTATGGG 23 V_PET1_01_M02037 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_HBP1_03_M02762 TRANSFAC - 39238878 39238893 6.0E-06 TGAATGAATGAAGGCT 16 V_HBP1_03_M02762 TRANSFAC - 39238882 39238897 0.0E+00 TTGTTGAATGAATGAA 16 V_HBP1_03_M02762 TRANSFAC + 39239059 39239074 7.0E-06 ATGATAAATGAATGGG 16 V_GR_Q6_M00192 TRANSFAC + 39239202 39239220 2.0E-06 TTAGCAAATTTTGTTCTTT 19 V_TEF_01_M01305 TRANSFAC - 39239019 39239030 9.0E-06 TACATTCTACTG 12 V_PAX8_01_M00717 TRANSFAC - 39238885 39238899 1.0E-05 GTTTGTTGAATGAAT 15 V_CETS1P54_01_M00032 TRANSFAC - 39238903 39238912 5.0E-06 ACCGGAAATA 10 V_PEA3_02_M02066 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_ERF_02_M02061 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_OCT1_B_M00342 TRANSFAC - 39238972 39238981 2.0E-06 AATGCAAATA 10 V_OCT_Q6_M00795 TRANSFAC + 39238971 39238981 7.0E-06 CTATTTGCATT 11 V_ER71_01_M01988 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_NET_01_M01982 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_IRF7_01_M00453 TRANSFAC + 39244804 39244821 5.0E-06 TGAGAATTCAAAATTATG 18 V_ER81_01_M01987 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_GR_Q6_02_M01836 TRANSFAC + 39239208 39239220 2.0E-06 AATTTTGTTCTTT 13 V_ZIC2_05_M02940 TRANSFAC - 39240658 39240672 3.0E-06 TCTCACAGCAGGTGG 15 V_ZIC2_05_M02940 TRANSFAC + 39244548 39244562 4.0E-06 ACTCCCAGCAGGGAA 15 V_ERM_02_M02069 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_POU5F1_01_M01307 TRANSFAC - 39238972 39238981 1.0E-06 AATGCAAATA 10 V_GABPBETA_Q3_M01876 TRANSFAC - 39238902 39238912 1.0E-05 ACCGGAAATAA 11 V_MYOD_Q6_01_M00929 TRANSFAC - 39240698 39240715 5.0E-06 CGGCAGCAGCTGGAGATG 18 V_HNF1_01_M00132 TRANSFAC - 39239104 39239118 7.0E-06 AGTTAAATATTTCCT 15 V_BARHL1_01_M01332 TRANSFAC + 39238893 39238908 4.0E-06 AACAAACATTTATTTC 16 V_FOXJ3_06_M02855 TRANSFAC - 39244740 39244756 0.0E+00 AAGACCAAAACAAACAA 17 V_E2F6_01_M01252 TRANSFAC - 39238943 39238950 1.0E-05 CGTTTCTT 8 V_ZBTB12_04_M02928 TRANSFAC + 39244699 39244713 3.0E-06 TATCATTAGAATGCT 15 V_GATA6_01_M00462 TRANSFAC + 39239058 39239067 9.0E-06 AATGATAAAT 10 V_GATA6_01_M00462 TRANSFAC - 39244696 39244705 6.0E-06 AATGATAAGG 10 V_TCFAP2B_03_M02820 TRANSFAC - 39238960 39238973 2.0E-06 TAGCCTGAAGGCAT 14 V_MECP2_02_M01299 TRANSFAC - 39238902 39238911 7.0E-06 CCGGAAATAA 10 V_FOX_Q2_M00809 TRANSFAC + 39244467 39244479 8.0E-06 CAAGATTTATTTT 13 V_STAT6_02_M00500 TRANSFAC + 39244502 39244509 1.0E-05 GATTTCCT 8 V_PLZF_02_M01075 TRANSFAC - 39244464 39244492 4.0E-06 TTGTAAAGGAAGTAAAATAAATCTTGCCT 29 V_BBX_03_M02739 TRANSFAC + 39238883 39238897 5.0E-06 TCATTCATTCAACAA 15 V_OCT1_06_M00162 TRANSFAC - 39239027 39239040 1.0E-06 CATAATGTGATACA 14 V_SAP1A_03_M02058 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_DMRT2_01_M01147 TRANSFAC - 39239023 39239038 0.0E+00 TAATGTGATACATTCT 16 V_CETS1_02_M02063 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_FOXJ2_01_M00422 TRANSFAC + 39238888 39238905 0.0E+00 CATTCAACAAACATTTAT 18 V_HNF1A_Q5_M02013 TRANSFAC - 39239108 39239118 4.0E-06 AGTTAAATATT 11 V_NET_02_M02060 TRANSFAC - 39238903 39238912 4.0E-06 ACCGGAAATA 10 V_PR_02_M00957 TRANSFAC + 39239198 39239224 2.0E-06 AAGCTTAGCAAATTTTGTTCTTTACCA 27 V_ELF_02_M02053 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_BARHL2_01_M01446 TRANSFAC + 39238893 39238908 9.0E-06 AACAAACATTTATTTC 16 V_ERG_02_M01985 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_GATA5_03_M02756 TRANSFAC - 39244692 39244708 2.0E-06 TCTAATGATAAGGAGAA 17 V_AP2ALPHA_02_M01045 TRANSFAC - 39238960 39238974 3.0E-06 ATAGCCTGAAGGCAT 15 V_ELF5_04_M02241 TRANSFAC + 39239870 39239878 9.0E-06 AACTTCCTT 9 V_ELF5_04_M02241 TRANSFAC + 39244479 39244487 4.0E-06 TACTTCCTT 9 V_HOXA10_01_M01464 TRANSFAC - 39244472 39244487 7.0E-06 AAGGAAGTAAAATAAA 16 V_HNF4_01_M00134 TRANSFAC + 39244657 39244675 9.0E-06 TCTTGGCTAAAGTTTAACA 19 V_GATA6_04_M02757 TRANSFAC - 39244692 39244708 6.0E-06 TCTAATGATAAGGAGAA 17 V_HNF1A_01_M02162 TRANSFAC - 39239105 39239118 3.0E-06 AGTTAAATATTTCC 14 V_FEV_01_M02269 TRANSFAC + 39239050 39239057 1.0E-05 CAGGAAAT 8 V_FEV_01_M02269 TRANSFAC - 39244503 39244510 1.0E-05 CAGGAAAT 8 V_ER71_02_M02067 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_PAX4_04_M00380 TRANSFAC - 39239844 39239873 1.0E-05 AGTTATAAACTCTGTGTCAGATCTCATTCC 30 V_RFX1_02_M00281 TRANSFAC + 39238924 39238941 5.0E-06 TGAGTATCATGGTAACAA 18 V_SPI1_02_M02043 TRANSFAC - 39244479 39244488 3.0E-06 AAAGGAAGTA 10 V_ZIC1_05_M02939 TRANSFAC - 39240658 39240672 2.0E-06 TCTCACAGCAGGTGG 15 V_ETV3_02_M02068 TRANSFAC - 39238903 39238912 3.0E-06 ACCGGAAATA 10 V_ELF4_02_M02056 TRANSFAC - 39238903 39238912 1.0E-06 ACCGGAAATA 10 V_OCT4_01_M01125 TRANSFAC - 39244697 39244711 1.0E-05 CATTCTAATGATAAG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.