Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 100130480 uncharacterized LOC100130480 chr18 + 6506414 - 6511914 6511414 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX + 6509263 6509277 7.0E-06 AGAAATTAAAGTGTT 15 SOX21_HMG_DBD_dimeric_15_1 SELEX + 6509543 6509557 9.0E-06 TGCAATGTCACTGTT 15 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 6509998 6510013 5.0E-06 ACAGTTCAAAATGTCC 16 SOX2_HMG_full_dimeric_17_1 SELEX - 6509542 6509558 9.0E-06 GAACAGTGACATTGCAA 17 FOXF2_MA0030.1 JASPAR - 6509284 6509297 7.0E-06 TTCAGATAAACATT 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 6510103 6510119 2.0E-06 GGAAAAAAAGATAAACA 17 ESR2_MA0258.1 JASPAR - 6509999 6510016 1.0E-05 TAAGGACATTTTGAACTG 18 POU3F2_POU_DBD_monomeric_13_1 SELEX + 6509937 6509949 4.0E-06 TTTGCATAAAACA 13 IRX2_homeodomain_DBD_dimeric_12_1 SELEX + 6510071 6510082 5.0E-06 TAACATGACACT 12 SRY_HMG_DBD_dimeric_16_1 SELEX + 6509354 6509369 1.0E-05 GACGATTTCTAATGTT 16 SOX8_HMG_full_dimeric_15_1 SELEX + 6509263 6509277 2.0E-06 AGAAATTAAAGTGTT 15 SOX8_HMG_full_dimeric_15_1 SELEX + 6509543 6509557 8.0E-06 TGCAATGTCACTGTT 15 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 6510135 6510148 2.0E-06 GAAAAAAATACACA 14 NFATC1_NFAT_full_dimeric_20_1 SELEX - 6509910 6509929 1.0E-06 GGGGGAAAAACGTTTTTCAA 20 SOX15_HMG_full_dimeric_15_1 SELEX - 6509543 6509557 6.0E-06 AACAGTGACATTGCA 15 MYBL1_MYB_DBD_dimeric_17_1 SELEX - 6509996 6510012 1.0E-05 GACATTTTGAACTGTTG 17 SOX7_HMG_full_dimeric_17_1 SELEX - 6509542 6509558 8.0E-06 GAACAGTGACATTGCAA 17 POU3F1_POU_DBD_monomeric_12_2 SELEX + 6509938 6509949 8.0E-06 TTGCATAAAACA 12 NR3C1_MA0113.1 JASPAR - 6509998 6510015 7.0E-06 AAGGACATTTTGAACTGT 18 NR3C1_MA0113.1 JASPAR + 6509999 6510016 1.0E-05 CAGTTCAAAATGTCCTTA 18 Sox3_HMG_DBD_dimeric_17_1 SELEX + 6509262 6509278 6.0E-06 CAGAAATTAAAGTGTTT 17 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 6510103 6510115 4.0E-06 AAAAAGATAAACA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 6510135 6510147 2.0E-06 AAAAAAATACACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 6510103 6510115 5.0E-06 AAAAAGATAAACA 13 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 6509321 6509332 0.0E+00 CAACATGAAATA 12 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 6510071 6510082 4.0E-06 TAACATGACACT 12 SOX9_HMG_full_dimeric_17_1 SELEX + 6509262 6509278 9.0E-06 CAGAAATTAAAGTGTTT 17 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 6510135 6510148 9.0E-06 GAAAAAAATACACA 14 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 6510071 6510082 7.0E-06 TAACATGACACT 12 V_DMRT4_01_M01149 TRANSFAC + 6509364 6509376 7.0E-06 AATGTTTCAGTAA 13 V_FOXP1_01_M00987 TRANSFAC + 6510102 6510121 6.0E-06 CTGTTTATCTTTTTTTCCAT 20 V_FREAC7_01_M00293 TRANSFAC - 6509282 6509297 5.0E-06 TTCAGATAAACATTGT 16 V_FREAC7_01_M00293 TRANSFAC - 6510099 6510114 9.0E-06 AAAAGATAAACAGCAA 16 V_NF1_Q6_01_M00806 TRANSFAC - 6509982 6509998 1.0E-06 TTGAATCATAGCCAAGC 17 V_BCL6_01_M01183 TRANSFAC + 6510098 6510113 5.0E-06 CTTGCTGTTTATCTTT 16 V_HOXA13_02_M01297 TRANSFAC + 6509328 6509336 1.0E-06 AAATAAAAC 9 V_SATB1_Q3_M01723 TRANSFAC - 6510006 6510021 7.0E-06 TGAAATAAGGACATTT 16 V_MAFB_03_M02879 TRANSFAC + 6509935 6509949 8.0E-06 CCTTTGCATAAAACA 15 V_POU2F3_01_M01476 TRANSFAC - 6509932 6509947 5.0E-06 TTTTATGCAAAGGCTA 16 V_FOXO3A_Q1_M01137 TRANSFAC + 6510080 6510091 4.0E-06 ACTAAACAAATT 12 V_HNF3_Q6_01_M01012 TRANSFAC + 6510098 6510115 4.0E-06 CTTGCTGTTTATCTTTTT 18 V_FOXJ1_03_M02750 TRANSFAC + 6510078 6510093 7.0E-06 ACACTAAACAAATTCT 16 V_HFH4_01_M00742 TRANSFAC - 6510082 6510094 1.0E-06 CAGAATTTGTTTA 13 V_LYF1_01_M00141 TRANSFAC + 6510058 6510066 3.0E-06 TTTGGGAGA 9 V_NFAT2_01_M01748 TRANSFAC - 6510113 6510121 3.0E-06 ATGGAAAAA 9 V_NR3C1_01_M02219 TRANSFAC - 6509998 6510015 7.0E-06 AAGGACATTTTGAACTGT 18 V_NR3C1_01_M02219 TRANSFAC + 6509999 6510016 1.0E-05 CAGTTCAAAATGTCCTTA 18 V_TCFAP2E_04_M02926 TRANSFAC + 6509322 6509335 3.0E-06 AACATGAAATAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 6510110 6510123 4.0E-06 ATATGGAAAAAAAG 14 V_TAL1_GATA1_01_M02243 TRANSFAC - 6509288 6509305 7.0E-06 GTGCAGACTTCAGATAAA 18 V_BARBIE_01_M00238 TRANSFAC - 6509964 6509978 5.0E-06 ATAAAAAGCCTGCTG 15 V_HNF1_C_M00206 TRANSFAC - 6509984 6510000 8.0E-06 TGTTGAATCATAGCCAA 17 V_HELIOSA_02_M01004 TRANSFAC - 6510113 6510123 1.0E-06 ATATGGAAAAA 11 V_IRX4_01_M01410 TRANSFAC + 6509318 6509334 1.0E-06 AAACAACATGAAATAAA 17 V_SOX18_03_M02801 TRANSFAC - 6509275 6509290 5.0E-06 AAACATTGTTGAAAAC 16 V_OCT1_04_M00138 TRANSFAC - 6510107 6510129 7.0E-06 AAACCAATATGGAAAAAAAGATA 23 Tal1_Gata1_MA0140.1 JASPAR - 6509288 6509305 7.0E-06 GTGCAGACTTCAGATAAA 18 V_GR_Q6_M00192 TRANSFAC + 6509998 6510016 4.0E-06 ACAGTTCAAAATGTCCTTA 19 V_ERBETA_Q5_M01875 TRANSFAC + 6510018 6510032 3.0E-06 TTCAAACTGGCCTGA 15 V_IRX3_01_M01318 TRANSFAC + 6509318 6509334 7.0E-06 AAACAACATGAAATAAA 17 V_OCT1_B_M00342 TRANSFAC - 6509935 6509944 9.0E-06 TATGCAAAGG 10 V_IRX5_01_M01472 TRANSFAC + 6509318 6509334 5.0E-06 AAACAACATGAAATAAA 17 V_GR_Q6_02_M01836 TRANSFAC + 6510004 6510016 9.0E-06 CAAAATGTCCTTA 13 V_HFH8_01_M00294 TRANSFAC + 6509283 6509295 9.0E-06 CAATGTTTATCTG 13 V_ZFP105_04_M02931 TRANSFAC + 6509365 6509381 9.0E-06 ATGTTTCAGTAACTTCA 17 V_IRX3_02_M01485 TRANSFAC + 6509318 6509334 6.0E-06 AAACAACATGAAATAAA 17 V_OCT2_01_M01368 TRANSFAC - 6509932 6509947 1.0E-05 TTTTATGCAAAGGCTA 16 V_MAX_04_M02881 TRANSFAC - 6510068 6510081 8.0E-06 GTGTCATGTTACTT 14 V_HDX_01_M01333 TRANSFAC - 6509305 6509321 4.0E-06 GTTTCGAAATCATCATG 17 V_GATA6_01_M00462 TRANSFAC - 6510104 6510113 9.0E-06 AAAGATAAAC 10 V_NRF2_Q4_M00821 TRANSFAC + 6509569 6509581 3.0E-06 CTGCTGTGTCACT 13 V_FOX_Q2_M00809 TRANSFAC + 6510132 6510144 8.0E-06 CTATGTGTATTTT 13 V_SMAD_Q6_01_M00974 TRANSFAC - 6510036 6510046 9.0E-06 TAGCCAGACTT 11 V_SRF_06_M02916 TRANSFAC - 6510107 6510123 8.0E-06 ATATGGAAAAAAAGATA 17 V_FOXJ2_01_M00422 TRANSFAC - 6509281 6509298 4.0E-06 CTTCAGATAAACATTGTT 18 V_FOXJ2_01_M00422 TRANSFAC - 6510098 6510115 2.0E-06 AAAAAGATAAACAGCAAG 18 V_FOXO1_01_M00473 TRANSFAC + 6510080 6510089 9.0E-06 ACTAAACAAA 10 V_FOXO4_01_M00472 TRANSFAC + 6510081 6510091 8.0E-06 CTAAACAAATT 11 V_HOXA10_01_M01464 TRANSFAC + 6509324 6509339 9.0E-06 CATGAAATAAAACTCT 16 V_HOXD10_01_M01375 TRANSFAC + 6509324 6509340 1.0E-05 CATGAAATAAAACTCTT 17 V_PAX4_04_M00380 TRANSFAC - 6510089 6510118 6.0E-06 GAAAAAAAGATAAACAGCAAGCTTCAGAAT 30 V_ESR2_01_M02377 TRANSFAC - 6509999 6510016 1.0E-05 TAAGGACATTTTGAACTG 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.