Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C20orf78 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 100128496 chromosome 20 open reading frame 78 chr20 - 18810339 - 18815839 18810839 Transcription Factor Binding Sites   Download all TFBS in the C20orf78 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SPIC_ETS_full_monomeric_14_1 SELEX - 18812711 18812724 2.0E-06 AGAAAGAGGAAGAT 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 18812567 18812583 9.0E-06 AGAAAAAAGTATAAACT 17 EWSR1-FLI1_MA0149.1 JASPAR + 18813575 18813592 2.0E-06 GGAAGAGAGAAAGGAGAG 18 Pax4_MA0068.1 JASPAR + 18812585 18812614 0.0E+00 GAATCAATGCAAAAATCACAGCCCCATCCC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 18812711 18812724 3.0E-06 AGAAAGAGGAAGAT 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 18813639 18813652 2.0E-06 TTAATCATAATTCT 14 Gfi_MA0038.1 JASPAR + 18812596 18812605 3.0E-06 AAAATCACAG 10 JDP2_bZIP_full_dimeric_9_1 SELEX - 18812678 18812686 7.0E-06 ATGACTCAC 9 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 18812743 18812755 5.0E-06 GCAATGTAATCAG 13 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 18812565 18812580 0.0E+00 ACAGAAAAAAGTATAA 16 SPI1_ETS_full_monomeric_14_1 SELEX - 18812711 18812724 2.0E-06 AGAAAGAGGAAGAT 14 TP53_MA0106.1 JASPAR - 18813829 18813848 9.0E-06 CAAGGCATGTTCTTGCTATG 20 TP53_MA0106.1 JASPAR + 18813835 18813854 1.0E-06 AAGAACATGCCTTGGGTATT 20 NFIA_NFI_full_monomeric_10_1 SELEX + 18813912 18813921 5.0E-06 TGTGCCAAGT 10 V_FOXP1_01_M00987 TRANSFAC - 18812565 18812584 7.0E-06 TAGTTTATACTTTTTTCTGT 20 V_KLF15_Q2_M01714 TRANSFAC - 18812757 18812770 1.0E-06 GAAGTGGGGAGTAG 14 V_BACH2_01_M00490 TRANSFAC + 18812677 18812687 2.0E-06 CGTGAGTCATA 11 V_AR_Q6_01_M01996 TRANSFAC + 18813546 18813560 7.0E-06 TTTCTTGATGTTCTG 15 V_SPDEF_04_M02915 TRANSFAC - 18813741 18813756 1.0E-06 GTTAACATCCCAGTAA 16 V_MAF_Q6_M00648 TRANSFAC - 18812761 18812776 0.0E+00 TGGAGGGAAGTGGGGA 16 V_PU1_Q4_M01172 TRANSFAC + 18812705 18812723 1.0E-06 TGATTTATCTTCCTCTTTC 19 V_BACH1_01_M00495 TRANSFAC + 18812675 18812689 3.0E-06 GTCGTGAGTCATAAC 15 V_CRX_Q4_M00623 TRANSFAC - 18813968 18813980 6.0E-06 TCTCTAATCACAT 13 V_ZFP410_03_M02832 TRANSFAC + 18813740 18813756 1.0E-05 GTTACTGGGATGTTAAC 17 V_GFI1_01_M00250 TRANSFAC + 18812590 18812613 6.0E-06 AATGCAAAAATCACAGCCCCATCC 24 V_GMEB1_03_M02761 TRANSFAC + 18812730 18812746 4.0E-06 GACTGTACGTAAACTGA 17 V_IRF3_Q3_M01279 TRANSFAC - 18812590 18812602 8.0E-06 TGATTTTTGCATT 13 V_HNF1_Q6_01_M01011 TRANSFAC + 18812566 18812586 6.0E-06 CAGAAAAAAGTATAAACTAGA 21 V_JUNDM2_04_M02876 TRANSFAC + 18812674 18812689 6.0E-06 TGTCGTGAGTCATAAC 16 V_JUNDM2_04_M02876 TRANSFAC - 18812675 18812690 6.0E-06 GGTTATGACTCACGAC 16 V_OCT1_08_M01354 TRANSFAC + 18812864 18812879 9.0E-06 GTATGTTCATTATCTA 16 V_GR_01_M00955 TRANSFAC + 18813539 18813565 1.0E-05 GAATGCTTTTCTTGATGTTCTGGAGAG 27 V_SPIB_01_M01204 TRANSFAC - 18812708 18812724 1.0E-06 AGAAAGAGGAAGATAAA 17 V_BBX_04_M02843 TRANSFAC - 18813745 18813761 9.0E-06 TATCTGTTAACATCCCA 17 V_NKX3A_01_M00451 TRANSFAC + 18812569 18812580 7.0E-06 AAAAAAGTATAA 12 V_SP3_Q3_M00665 TRANSFAC + 18812906 18812919 1.0E-06 AGCCCTGGGGAGGG 14 V_HOXD9_Q2_M01834 TRANSFAC + 18812879 18812888 6.0E-06 AGGCATAAAA 10 V_TFIII_Q6_M00706 TRANSFAC + 18813589 18813597 6.0E-06 AGAGGGAGG 9 V_ELF1_Q6_M00746 TRANSFAC - 18812712 18812723 2.0E-06 GAAAGAGGAAGA 12 V_AP1_Q4_01_M00926 TRANSFAC + 18812679 18812686 1.0E-05 TGAGTCAT 8 V_GFI1_Q6_M01067 TRANSFAC + 18812595 18812607 2.0E-06 AAAAATCACAGCC 13 V_POU5F1_01_M01307 TRANSFAC + 18812590 18812599 0.0E+00 AATGCAAAAA 10 V_FOXJ3_06_M02855 TRANSFAC - 18813728 18813744 8.0E-06 GTAACCAAAACAAGTCA 17 V_PXR_Q2_M00964 TRANSFAC + 18812916 18812927 4.0E-06 AGGGTTAATGTC 12 V_FRA1_Q5_M01267 TRANSFAC + 18812679 18812686 1.0E-05 TGAGTCAT 8 V_PLZF_02_M01075 TRANSFAC - 18812563 18812591 8.0E-06 TTGATTCTAGTTTATACTTTTTTCTGTAT 29 V_ZFP281_01_M01597 TRANSFAC + 18813680 18813690 5.0E-06 TGGGGGAAGGG 11 V_TITF1_Q3_M00432 TRANSFAC - 18812700 18812709 5.0E-06 AATCAAGTGT 10 V_SOX14_04_M02901 TRANSFAC + 18813786 18813802 1.0E-06 CTCTTGGGTGGGGATTT 17 V_ZFP281_04_M02831 TRANSFAC - 18813678 18813692 9.0E-06 TCCCCTTCCCCCACG 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 18813575 18813592 2.0E-06 GGAAGAGAGAAAGGAGAG 18 V_GFI1_Q6_01_M02010 TRANSFAC - 18812596 18812605 2.0E-06 CTGTGATTTT 10 V_TAACC_B_M00331 TRANSFAC + 18813945 18813967 7.0E-06 CAAACCCCAGCCAACCCACAGAT 23 V_PBX1_Q3_M02028 TRANSFAC - 18812704 18812712 6.0E-06 ATAAATCAA 9 V_GLIS2_04_M02863 TRANSFAC - 18813636 18813649 4.0E-06 ATTATGATTAACGA 14 V_PAX4_04_M00380 TRANSFAC + 18812577 18812606 0.0E+00 ATAAACTAGAATCAATGCAAAAATCACAGC 30 V_SOX14_03_M02798 TRANSFAC - 18813638 18813653 8.0E-06 GAGAATTATGATTAAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.