Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 10002 nuclear receptor subfamily 2, group E, member 3 chr15 + 72097893 - 72103393 72102893 V_PNR_01_M01650 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 72105418 72105426 3.0E-06 CCACTTGAA 9 PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 72099729 72099737 1.0E-05 TTTAATCCC 9 Pax5_MA0014.1 JASPAR - 72099706 72099725 1.0E-06 GGTGAACTGAAGCGGAAAGG 20 PAX6_PAX_DBD_monomeric_19_1 SELEX + 72099707 72099725 9.0E-06 CTTTCCGCTTCAGTTCACC 19 SOX4_HMG_DBD_dimeric_16_1 SELEX + 72100493 72100508 7.0E-06 GAACACTTGCATGGTG 16 Pax6_MA0069.1 JASPAR + 72099708 72099721 3.0E-06 TTTCCGCTTCAGTT 14 SOX2_HMG_full_dimeric_17_1 SELEX + 72100493 72100509 4.0E-06 GAACACTTGCATGGTGA 17 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 72098884 72098896 7.0E-06 ATAATTGTATTAG 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 6.0E-06 CTAATACAATTAT 13 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 72100650 72100660 8.0E-06 AGCCTTAGGCA 11 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 72098921 72098932 9.0E-06 AATCTGCTGAGT 12 EWSR1-FLI1_MA0149.1 JASPAR - 72100460 72100477 7.0E-06 GAAAGGAAGCATGCCAAG 18 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 4.0E-06 CTAATACAATTAT 13 Sox17_HMG_DBD_dimeric_15_1 SELEX + 72100494 72100508 2.0E-06 AACACTTGCATGGTG 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 72098915 72098929 6.0E-06 CAGCTTACTCAGCAG 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 72098915 72098929 5.0E-06 CTGCTGAGTAAGCTG 15 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 8.0E-06 CTAATACAATTAT 13 PITX1_homeodomain_full_monomeric_8_1 SELEX + 72099730 72099737 1.0E-05 TTAATCCC 8 PROP1_homeodomain_full_dimeric_11_1 SELEX + 72098885 72098895 5.0E-06 TAATTGTATTA 11 PROP1_homeodomain_full_dimeric_11_1 SELEX - 72098885 72098895 1.0E-06 TAATACAATTA 11 ALX3_homeodomain_full_dimeric_13_1 SELEX - 72098884 72098896 3.0E-06 CTAATACAATTAT 13 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 72100874 72100890 4.0E-06 AGGTGATGACAAGTTCA 17 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 72100655 72100668 8.0E-06 TAGGCATTTTCAAA 14 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 72098971 72098980 9.0E-06 ACCAGCTGCT 10 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 72098884 72098896 7.0E-06 ATAATTGTATTAG 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 3.0E-06 CTAATACAATTAT 13 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 72098914 72098930 5.0E-06 TCTGCTGAGTAAGCTGC 17 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 72100874 72100890 5.0E-06 AGGTGATGACAAGTTCA 17 PHOX2B_homeodomain_full_dimeric_11_1 SELEX - 72098885 72098895 2.0E-06 TAATACAATTA 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 72098884 72098896 8.0E-06 ATAATTGTATTAG 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 3.0E-06 CTAATACAATTAT 13 SOX18_HMG_full_dimeric_15_1 SELEX + 72100494 72100508 3.0E-06 AACACTTGCATGGTG 15 MAFK_bZIP_full_dimeric_15_1 SELEX - 72098915 72098929 5.0E-06 CTGCTGAGTAAGCTG 15 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 72098912 72098932 2.0E-06 TGGCAGCTTACTCAGCAGATT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 72098912 72098932 3.0E-06 AATCTGCTGAGTAAGCTGCCA 21 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 72105417 72105426 1.0E-06 ACCACTTGAA 10 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 72098885 72098895 3.0E-06 TAATACAATTA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 2.0E-06 CTAATACAATTAT 13 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 72099730 72099737 1.0E-05 TTAATCCC 8 PITX1_homeodomain_full_monomeric_9_1 SELEX + 72099729 72099737 4.0E-06 TTTAATCCC 9 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 72098884 72098896 7.0E-06 ATAATTGTATTAG 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 72098884 72098896 4.0E-06 CTAATACAATTAT 13 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 72100650 72100660 9.0E-06 AGCCTTAGGCA 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 72100650 72100660 6.0E-06 TGCCTAAGGCT 11 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 72103457 72103469 8.0E-06 CGCCCTTAGGGCT 13 MAFG_bZIP_full_dimeric_21_1 SELEX + 72098912 72098932 5.0E-06 TGGCAGCTTACTCAGCAGATT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 72098912 72098932 3.0E-06 AATCTGCTGAGTAAGCTGCCA 21 Myf_MA0055.1 JASPAR + 72098970 72098981 2.0E-06 CAGCAGCTGGTG 12 Myf_MA0055.1 JASPAR - 72098970 72098981 8.0E-06 CACCAGCTGCTG 12 Sox11_HMG_DBD_dimeric_15_1 SELEX + 72100494 72100508 2.0E-06 AACACTTGCATGGTG 15 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 72098885 72098895 2.0E-06 TAATACAATTA 11 IRF3_IRF_full_trimeric_21_1 SELEX - 72099705 72099725 7.0E-06 GGTGAACTGAAGCGGAAAGGG 21 NFIA_NFI_full_monomeric_10_1 SELEX + 72105563 72105572 9.0E-06 GGTGCCAAAT 10 RREB1_MA0073.1 JASPAR - 72100733 72100752 5.0E-06 CCCCAGACCAAACCACCCCC 20 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 72099147 72099160 8.0E-06 GAATACAGTCAAAA 14 V_FOXP1_01_M00987 TRANSFAC - 72099157 72099176 4.0E-06 ATTTTTACGCTGTTGATTTT 20 RXR_RAR_DR5_MA0159.1 JASPAR + 72100874 72100890 6.0E-06 AGGTGATGACAAGTTCA 17 V_TST1_02_M01316 TRANSFAC + 72100350 72100366 7.0E-06 AGCAAATTACTTAACTT 17 V_SREBP2_Q6_M01177 TRANSFAC + 72105410 72105421 8.0E-06 AGGCCACACCAC 12 V_MAFB_05_M02775 TRANSFAC + 72098857 72098873 1.0E-05 GAAGTTGCTGACCTGTC 17 V_SPIB_02_M02041 TRANSFAC + 72098853 72098862 8.0E-06 AGAGGAAGTT 10 V_MAFB_03_M02879 TRANSFAC - 72099246 72099260 6.0E-06 AAATGGCAAAAACAA 15 V_PROP1_01_M01294 TRANSFAC + 72098885 72098895 1.0E-06 TAATTGTATTA 11 V_PROP1_01_M01294 TRANSFAC - 72098885 72098895 6.0E-06 TAATACAATTA 11 V_ISL2_01_M01328 TRANSFAC + 72100351 72100366 4.0E-06 GCAAATTACTTAACTT 16 V_SRY_02_M00160 TRANSFAC - 72099242 72099253 5.0E-06 AAAAACAAAACA 12 V_SOX11_04_M02899 TRANSFAC + 72098884 72098897 7.0E-06 ATAATTGTATTAGT 14 V_SPZ1_01_M00446 TRANSFAC + 72105349 72105363 2.0E-06 TGAGGAGGGTTTGAG 15 V_DLX2_01_M01468 TRANSFAC + 72098881 72098896 0.0E+00 GGAATAATTGTATTAG 16 V_PITX2_Q6_M02114 TRANSFAC + 72099729 72099738 3.0E-06 TTTAATCCCA 10 V_AP4_Q6_01_M00927 TRANSFAC - 72098972 72098980 6.0E-06 ACCAGCTGC 9 V_P53_02_M00272 TRANSFAC + 72105451 72105460 4.0E-06 AGGCATGTCT 10 V_P53_02_M00272 TRANSFAC - 72105451 72105460 1.0E-06 AGACATGCCT 10 V_CEBPB_01_M00109 TRANSFAC - 72100353 72100366 7.0E-06 AAGTTAAGTAATTT 14 V_CP2_02_M00947 TRANSFAC + 72100736 72100750 8.0E-06 GGTGGTTTGGTCTGG 15 V_CRX_Q4_M00623 TRANSFAC + 72099727 72099739 4.0E-06 CCTTTAATCCCAC 13 V_MYF_01_M01302 TRANSFAC + 72098970 72098981 2.0E-06 CAGCAGCTGGTG 12 V_MYF_01_M01302 TRANSFAC - 72098970 72098981 8.0E-06 CACCAGCTGCTG 12 V_SPI1_03_M02078 TRANSFAC + 72098853 72098862 2.0E-06 AGAGGAAGTT 10 V_CEBPE_Q6_M01868 TRANSFAC + 72107893 72107906 1.0E-06 TCAAATTTCAAAAT 1 V_TCFAP2C_03_M02821 TRANSFAC - 72098871 72098885 3.0E-06 ATTCCCCCAGGGGAC 15 V_SOX7_04_M02911 TRANSFAC + 72098881 72098902 6.0E-06 GGAATAATTGTATTAGTGATAA 22 V_CEBPD_Q6_M00621 TRANSFAC + 72100354 72100365 3.0E-06 AATTACTTAACT 12 V_AMEF2_Q6_M00403 TRANSFAC - 72100654 72100671 8.0E-06 AGGTTTGAAAATGCCTAA 18 V_NKX22_02_M01372 TRANSFAC + 72105414 72105430 1.0E-06 CACACCACTTGAATACA 17 V_EGR1_04_M02848 TRANSFAC + 72107792 72107807 2.0E-06 TGAAGAGTGGGATTCA 16 V_MATH1_Q2_M01716 TRANSFAC + 72098972 72098981 3.0E-06 GCAGCTGGTG 10 V_ASCL2_03_M02737 TRANSFAC - 72098967 72098983 6.0E-06 ATCACCAGCTGCTGGGG 17 V_YY1_Q6_02_M01035 TRANSFAC + 72099251 72099261 3.0E-06 TTTGCCATTTT 11 V_ZBRK1_01_M01105 TRANSFAC + 72105311 72105325 3.0E-06 GGCAAGCAGATCTTT 15 V_MEF2_04_M00233 TRANSFAC - 72099250 72099271 3.0E-06 TGTATTACCTAAAATGGCAAAA 22 V_ATF3_Q6_M00513 TRANSFAC - 72105592 72105605 7.0E-06 TCCTGACATCAGCC 14 V_MAFK_Q3_M02022 TRANSFAC + 72098919 72098929 7.0E-06 TTACTCAGCAG 11 V_SRF_Q5_02_M01007 TRANSFAC + 72099250 72099268 9.0E-06 TTTTGCCATTTTAGGTAAT 19 V_FOXO1_Q5_M01216 TRANSFAC - 72099245 72099253 1.0E-06 AAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC - 72100374 72100382 1.0E-05 AAAAACAGA 9 V_GR_Q6_02_M01836 TRANSFAC - 72103443 72103455 9.0E-06 TTCTCTGTTCTTT 13 V_OTX2_Q3_M01719 TRANSFAC - 72099728 72099740 8.0E-06 GGTGGGATTAAAG 13 V_AML2_Q3_01_M01854 TRANSFAC + 72105413 72105423 4.0E-06 CCACACCACTT 11 V_TAL1_01_M01591 TRANSFAC - 72099647 72099659 6.0E-06 CTTCCTTCTCTCA 13 V_CEBPA_01_M00116 TRANSFAC + 72100353 72100366 4.0E-06 AAATTACTTAACTT 14 V_ZBTB3_03_M02825 TRANSFAC - 72100269 72100285 7.0E-06 CTTGGCACTGCACTCAG 17 V_FOXL1_02_M02857 TRANSFAC - 72099237 72099252 5.0E-06 AAAACAAAACAAGCCA 16 V_HEN1_02_M00058 TRANSFAC + 72105499 72105520 6.0E-06 AAATGTCCCAGCTGCAGCTCTG 22 V_PITX1_01_M01484 TRANSFAC - 72099726 72099742 6.0E-06 GTGGTGGGATTAAAGGA 17 V_TFIIA_Q6_M00707 TRANSFAC + 72099830 72099841 8.0E-06 TCTGAGAGGAGC 12 V_TBX15_02_M01264 TRANSFAC - 72100662 72100679 4.0E-06 ATGCGTGCAGGTTTGAAA 18 V_SPIC_02_M02077 TRANSFAC + 72098853 72098862 1.0E-06 AGAGGAAGTT 10 V_PITX2_Q2_M00482 TRANSFAC + 72099729 72099739 1.0E-06 TTTAATCCCAC 11 V_ETS1_B_M00339 TRANSFAC + 72098853 72098867 8.0E-06 AGAGGAAGTTGCTGA 15 V_ZFP281_01_M01597 TRANSFAC - 72099003 72099013 9.0E-06 TGGGGGTTGGG 11 V_RXR_RAR_01_M02272 TRANSFAC + 72100874 72100890 6.0E-06 AGGTGATGACAAGTTCA 17 V_SRF_02_M01257 TRANSFAC - 72099249 72099266 2.0E-06 TACCTAAAATGGCAAAAA 18 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 72100702 72100716 1.0E-06 CCTGGGGTTACTACC 15 V_TCFAP2A_03_M02819 TRANSFAC - 72098871 72098885 2.0E-06 ATTCCCCCAGGGGAC 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 72100460 72100477 7.0E-06 GAAAGGAAGCATGCCAAG 18 V_VDR_Q3_M00444 TRANSFAC - 72099721 72099735 2.0E-06 GATTAAAGGAGGTGA 15 V_SOX1_03_M02802 TRANSFAC - 72098883 72098898 4.0E-06 CACTAATACAATTATT 16 V_FOXO1_01_M00473 TRANSFAC - 72099245 72099254 4.0E-06 CAAAAACAAA 10 V_PPARG_02_M00515 TRANSFAC + 72099258 72099280 9.0E-06 TTTTAGGTAATACATACCCACTA 23 V_PPARG_02_M00515 TRANSFAC - 72099258 72099280 9.0E-06 TAGTGGGTATGTATTACCTAAAA 23 V_IRF1_01_M00062 TRANSFAC - 72099242 72099254 5.0E-06 CAAAAACAAAACA 13 V_MOX1_01_M01443 TRANSFAC + 72098881 72098896 9.0E-06 GGAATAATTGTATTAG 16 V_FOXO4_01_M00472 TRANSFAC - 72099243 72099253 1.0E-05 AAAAACAAAAC 11 V_CEBP_Q2_01_M00912 TRANSFAC + 72100355 72100366 9.0E-06 ATTACTTAACTT 12 V_SOX5_07_M02909 TRANSFAC + 72098881 72098897 7.0E-06 GGAATAATTGTATTAGT 17 V_TCF11MAFG_01_M00284 TRANSFAC + 72107774 72107795 9.0E-06 AAGACTTGACTTAGCATCTGAA 22 V_BRCA_01_M01082 TRANSFAC + 72107845 72107852 1.0E-05 TTCTGTTG 8 V_SMAD1_01_M01590 TRANSFAC - 72099242 72099253 3.0E-06 AAAAACAAAACA 12 V_SPI1_02_M02043 TRANSFAC + 72098853 72098862 6.0E-06 AGAGGAAGTT 10 V_PAX6_01_M00097 TRANSFAC + 72099704 72099724 1.0E-06 GCCCTTTCCGCTTCAGTTCAC 21 V_SPIB_03_M02076 TRANSFAC + 72098853 72098862 2.0E-06 AGAGGAAGTT 10 V_NF1_Q6_M00193 TRANSFAC + 72100459 72100476 1.0E-05 ACTTGGCATGCTTCCTTT 18 V_NANOG_02_M01247 TRANSFAC - 72099238 72099257 4.0E-06 TGGCAAAAACAAAACAAGCC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.