Plaisier CL, O'Brien S, Bernard B, Reynolds S, Simon Z, Toledo CM, Ding Y, Reiss DJ, Paddison PJ, Baliga NS. Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis. Cell Syst. 2016 Aug;3(2):172-86. doi: 10.1016/j.cels.2016.06.006. PubMed PMID: 27426982; PubMed Central PMCID: PMC5001912.

Motif Repositories
• JASPAR - Mathelier et al., 2014
• SELEX - Jolma et al., 2013
• TRANSFAC - Matys et al., 2006
• UniPROBE - Newburger and Bulyk, 2009

ENCODE Data
• ENCODE Digital Genomic Footprinting - Neph et al., 2012
• ENCODE ChIP-seq data - Wang et al., 2012
Genome Data
• UCSC hg19 Genome Sequences - hg19 Masked Fasta Files
• Gene Definitions - RefGene File

The transcription factor target gene database was developed at the Institute for Systems Biology by Chris Plaisier in Nitin Baliga's lab. Feel free to contact us at:

• cplaisier at systemsbiology dot org
• nbaliga at systemsbiology dot org